PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25786
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 716aa    MW: 81262.7 Da    PI: 8.0146
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25786genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY84.11.3e-26642703159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                                ldDgy+WrKYG K+v+ +++prsYYrC ++   gC ++k+ver++++ +vv++tY geHnh+
  Tp57577_TGAC_v2_mRNA25786 642 LDDGYRWRKYGMKVVNRNPNPRSYYRCIHRrqrGCLARKQVERASHNIRVVITTYWGEHNHD 703
                                59**************************998899***************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142231.1E-3627161No hitNo description
PfamPF139765.0E-11407459IPR025724GAG-pre-integrase domain
PROSITE profilePS509948.906460602IPR001584Integrase, catalytic core
Gene3DG3DSA:3.30.420.102.1E-9472557IPR012337Ribonuclease H-like domain
SuperFamilySSF530983.41E-14473558IPR012337Ribonuclease H-like domain
PfamPF006653.9E-8476557IPR001584Integrase, catalytic core
Gene3DG3DSA:2.20.25.806.0E-27636703IPR003657WRKY domain
PROSITE profilePS5081131.789637705IPR003657WRKY domain
SuperFamilySSF1182901.31E-23638704IPR003657WRKY domain
SMARTSM007744.6E-33642704IPR003657WRKY domain
PfamPF031062.2E-22643703IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0015074Biological ProcessDNA integration
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 716 aa     Download sequence    Send to blast
MAPNQYTTNT KNLEQFVPKL TDEFVAWRKA DRLLRGWIIG TLSEEALGLV VGIDTAHAVW  60
DALKDAYAED SQEREFTIRQ QITYLRKEED QTIGDHIRIF KGLCDNLAAI GKPVPDKEKV  120
FYLLTSLGPD YETFTTTMLK PPRPSYSELI SQLQSLDQRR NWFSNRAKLQ NSFAPQIAFY  180
GQQQRSHQSS SRNRDNSHNF TSTGRGKNKN QHTVTSQQRR PPPPGERRMT PAERDLYRNE  240
KCQYCGTVGH IAKICWWVPK KPTQVDDIPQ ALAALTLDNT IAETEWISDT GASNHMTGTT  300
SMLSNIRQSS GTDSVLIGDG SPLPIHGIGD SFIKQKNITL PLHDVLLVPD LTKNLLSVSQ  360
LTKHFPVNCE FSNADFCVKE RETGEPIITG RRKGDLYVLS SFPELYFSNR FKSGSADIWH  420
QRLGHPQTLA LQLLKNKGLI DVVGTVKPEH VCDSCQLGKL NKLPFSSSEN SSSAIFEKIH  480
CDLWGPAPVL SISKFKYYAC LVDDFSKYTW IIPLHHKSDF ANAYLSFEQY VKKQFNKEIK  540
IFHSDGGGEF INSKLSTHFH LTARTSTSPP CLSPLPTNLE HSLALQHPTS IIDQQEQAAQ  600
TEPEHPHHSS HHLRIENEFE PVTLTPPINQ PEQSSCDAID ILDDGYRWRK YGMKVVNRNP  660
NPRSYYRCIH RRQRGCLARK QVERASHNIR VVITTYWGEH NHDVSLQLVE VEAIQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-206397041476Probable WRKY transcription factor 4
2lex_A2e-206397041476Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25786
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021631784.11e-176uncharacterized protein LOC110629178
TrEMBLA0A2Z6NS080.0A0A2Z6NS08_TRISU; Uncharacterized protein (Fragment)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G26640.11e-25WRKY family protein