PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25781
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 586aa    MW: 65636.6 Da    PI: 6.7368
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25781genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix79.54.9e-25178887
                   trihelix  8 laLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87
                               +aL+++r++m++++r+++ k+plW+evs+k++e g++rs+k+Ckek+en+ k++k++k+g+++++  + +t+++fdqlea
  Tp57577_TGAC_v2_mRNA25781  1 MALLRIRSDMDTTFRDASVKGPLWDEVSRKLAELGYHRSAKKCKEKFENVYKYHKRTKDGRGGKS--DGKTYRFFDQLEA 78
                               58************************************************************964..5557*******85 PP
2trihelix107.31e-33400485187
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdq 84 
                                rW+k ev+aLi++r++m+++++++  k+plWee+s++m+  g++r++k+Ckekwen+nk++kk+ke++kkr +e+s+tcpyf+q
  Tp57577_TGAC_v2_mRNA25781 400 RWPKVEVQALINLRTSMDNKYQENVPKGPLWEEISSAMKNLGYNRNAKRCKEKWENINKYFKKVKESNKKR-PEDSKTCPYFHQ 482
                                8*********************************************************************8.99********** PP

                   trihelix  85 lea 87 
                                l+a
  Tp57577_TGAC_v2_mRNA25781 483 LDA 485
                                *85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.227151IPR017877Myb-like domain
CDDcd122037.22E-18258No hitNo description
PfamPF138371.3E-15279No hitNo description
SMARTSM007177.5E-4397459IPR001005SANT/Myb domain
CDDcd122037.98E-29399464No hitNo description
Gene3DG3DSA:1.10.10.606.8E-5399456IPR009057Homeodomain-like
PROSITE profilePS500907.131399457IPR017877Myb-like domain
PfamPF138377.1E-23400486No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 586 aa     Download sequence    Send to blast
MALLRIRSDM DTTFRDASVK GPLWDEVSRK LAELGYHRSA KKCKEKFENV YKYHKRTKDG  60
RGGKSDGKTY RFFDQLEALD HFHNPPSNHP QPQNQPQISA PTIAPPQVVT TTATISIPIA  120
EPATIPMSLR PVVNTTLSIP NASVPLIPMP QNNIVTTQSI MNMNQTIPSN PSTNFQPSTI  180
NPATIASLPS FPNISTDLFS NSMASSYSTS SDDTMEEGSR KRKRKWTNFF ERLMKEVIEK  240
QEDLHKRFLE AIEKREQDRM AREEAWREQE MQRINREREI LAQERSVSAA KDAAIMSFLQ  300
KIAEQQNLGQ ALNIINIAQP PPPPQQQPQK QRSAAAAATT PLPPAPTPIS VVQQVQAHPP  360
PSSKPAPPTA PQQQQQSVTN MEIVKVDNNG ENFMGVSPSR WPKVEVQALI NLRTSMDNKY  420
QENVPKGPLW EEISSAMKNL GYNRNAKRCK EKWENINKYF KKVKESNKKR PEDSKTCPYF  480
HQLDALYKEK GKGDNSGGSG GSSQVVKPDN MTAPLMVRPE QQWPPQQEED RMNRDRGEEE  540
DDMDEDDKEG EDENEQDMDE SGGCGGGGSN FEVVAASKPT VDASA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1219224RKRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25781
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2255461e-159AC225546.4 Medicago truncatula clone mth2-78i17, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003592114.10.0trihelix transcription factor GT-2
TrEMBLA0A2K3N7980.0A0A2K3N798_TRIPR; Trihelix transcription factor GT-2-like protein
STRINGAES623650.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF37334181
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76880.12e-74Trihelix family protein