PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25730
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 495aa    MW: 53891.3 Da    PI: 8.3137
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25730genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY71.61.1e-22183240259
                                --SS-EEEEEEE--TT-S.S-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgse.fprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                +DgynWrKYGqK+vk+ +  +rsYYrCt+++C++kk +e+ ++ ++v+e++Y++eH h+
  Tp57577_TGAC_v2_mRNA25730 183 SDGYNWRKYGQKQVKSPTtSSRSYYRCTQSNCCAKK-IECWDHSGHVIETVYRSEHSHD 240
                                7**************975268*************98.*********************7 PP
2WRKY96.41.9e-30357413359
                                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 
                                Dgy+WrKYGqK+vkg+++pr+YYrCtsagCpv+k++e++ ++ ++v+itY+g H+h+
  Tp57577_TGAC_v2_mRNA25730 357 DGYRWRKYGQKMVKGNPHPRNYYRCTSAGCPVRKHIETAVDNSDAVIITYKGVHDHD 413
                                9*******************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.1E-19176242IPR003657WRKY domain
SuperFamilySSF1182902.62E-18177242IPR003657WRKY domain
SMARTSM007741.4E-20182241IPR003657WRKY domain
PROSITE profilePS5081115.881183242IPR003657WRKY domain
PfamPF031062.7E-16184240IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.5E-31340415IPR003657WRKY domain
PROSITE profilePS5081131.846350415IPR003657WRKY domain
SuperFamilySSF1182906.8E-27351415IPR003657WRKY domain
SMARTSM007741.5E-34355414IPR003657WRKY domain
PfamPF031062.1E-23357412IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MAEHRVTEAL PKENCSETND EQKTQEIKQE RVTESPPATE SKKDDLPSSI EQPIEHNSET  60
LIAFPSPVLQ NQSFVADLQG SPNTMNSSVK AENKETVGPP EKEITARQEA QTPPTQTGNQ  120
LPSTVFSPPN SVTNSLSSVP SPTIGIEKIS TPNVSNMLVP AGKRNLSGAK PLSSVTVPRT  180
PSSDGYNWRK YGQKQVKSPT TSSRSYYRCT QSNCCAKKIE CWDHSGHVIE TVYRSEHSHD  240
PPRKINSVRE SKLAPSIEPT AQNSVLVKPV NVLKESDPST SSKAQEEAPC GTDKKPQNSS  300
NINGNGKVIL KEEHLDEPEP KRRKEKDDLI HSDSPVNPGK KPKYVVHAAG DVGISGDGYR  360
WRKYGQKMVK GNPHPRNYYR CTSAGCPVRK HIETAVDNSD AVIITYKGVH DHDTPVPKKR  420
HGPPSAPLVA AAAPVSMNNL QLTKPDSPQN EKVSTKWSVG KEGELTGEAM ELGGEKAIES  480
AKTLLSIGFE IKPC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A7e-24345415474WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element. {ECO:0000250|UniProtKB:Q9SI37}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25730
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1340590.0BT134059.1 Medicago truncatula clone JCVI-FLMt-18C20 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003610322.20.0LOW QUALITY PROTEIN: probable WRKY transcription factor 32
SwissprotP595831e-125WRK32_ARATH; Probable WRKY transcription factor 32
TrEMBLA0A2K3PPC90.0A0A2K3PPC9_TRIPR; WRKY transcription factor
STRINGXP_004507735.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51983456
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G30935.11e-118WRKY DNA-binding protein 32