PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA25714 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | AP2 | ||||||||
Protein Properties | Length: 366aa MW: 41796.2 Da PI: 6.1226 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 30.6 | 8.4e-10 | 45 | 114 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.pse....ng.....kr.krfsl....gkfgtaeeAakaaiaarkkleg 55 s y+GV++++++gr++A+++d ++ n+ + k+f++ g ++ +e Aa a++ a++k++g Tp57577_TGAC_v2_mRNA25714 45 SIYRGVTRHRWTGRYEAHLWDkNCWnesqNKkgrqvFCiKQFHVveisGAYDNEETAAHAYDLAALKYWG 114 57*******************999977644488776448****988889*******************98 PP | |||||||
2 | AP2 | 51 | 3.5e-16 | 157 | 208 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV +++ +grW+A+I + g +k+ +lg++ t eeAa a++ a+ +++g Tp57577_TGAC_v2_mRNA25714 157 SKYRGVARHHHNGRWEARIGKvF---G-NKYLYLGTYATQEEAATAYDMAAIEYRG 208 89****99**********99966...3.6*************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF00847 | 1.9E-6 | 45 | 114 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.77E-14 | 45 | 124 | No hit | No description |
SuperFamily | SSF54171 | 1.7E-11 | 45 | 124 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 16.542 | 46 | 122 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 1.9E-10 | 46 | 123 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 1.9E-16 | 46 | 128 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 47 | 58 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 1.9E-5 | 104 | 124 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 9.81E-18 | 157 | 218 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 3.5E-12 | 157 | 208 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 2.45E-24 | 157 | 218 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 6.9E-18 | 158 | 217 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-25 | 158 | 222 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 18.334 | 158 | 216 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 366 aa Download sequence Send to blast |
MAKKSQKQIE KDNDNNNLNA SNTVTTKAKR TRKSVPRTSP PQRSSIYRGV TRHRWTGRYE 60 AHLWDKNCWN ESQNKKGRQV FCIKQFHVVE ISGAYDNEET AAHAYDLAAL KYWGQDTIIN 120 FPLSNYQKEL IDMESQSREE YIGSLRRKSS GFSRGVSKYR GVARHHHNGR WEARIGKVFG 180 NKYLYLGTYA TQEEAATAYD MAAIEYRGLN AVTNFDLSRY IKWLKPNNNN NNDNNKSNIN 240 LSDINSNYST NDQNSNEELE ISILDNETLS LNNSIDEATL VQPRPTSATS ALELLLQSSK 300 FKEMVEMASM TSNVSTTLES DQLSQCSFPD DIQTYFEYED FNDGTMLDDL NSIVPMFHFE 360 GAEIL* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA25714 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC126784 | 0.0 | AC126784.11 Medicago truncatula chromosome 8 clone mth2-36b12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003610261.2 | 0.0 | AP2-like ethylene-responsive transcription factor At1g16060 | ||||
Swissprot | Q94AN4 | 1e-104 | AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060 | ||||
TrEMBL | G7JFH5 | 0.0 | G7JFH5_MEDTR; AP2-like ethylene-responsive transcription factor | ||||
STRING | AES92458 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1300 | 34 | 101 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16060.1 | 9e-94 | ARIA-interacting double AP2 domain protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA25714 |
Publications ? help Back to Top | |||
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