PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25651
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family MYB_related
Protein Properties Length: 798aa    MW: 88622.6 Da    PI: 7.1735
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25651genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.56.2e-085597347
                               SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
            Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                               +WT +E+e +  a +q G++ +++I ++++  +   q++++++ +
  Tp57577_TGAC_v2_mRNA25651 55 AWTRQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 97
                               6*****************99.*********.***********976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.5E-1048102IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.7E-551100IPR009057Homeodomain-like
PROSITE profilePS5129313.41651102IPR017884SANT domain
SMARTSM007172.7E-652100IPR001005SANT/Myb domain
PfamPF002495.6E-65597IPR001005SANT/Myb domain
CDDcd001677.30E-65598No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 798 aa     Download sequence    Send to blast
MQTEAEILTD LSTQLHSETV VSVQNEDPGV STSLANVAVL PQQPAPKKPT RQWAAWTRQE  60
EESFFTALRQ VGKNFEKITS RVQSKNKDQV RHYYYRLVRR MNKLLGPELC LDAKNSKDTN  120
AAMLRWWSLL EKYRFKASKL HLKPRRFKIF LEALEHQLLK DRKKNVRKRP LQGGNCQPPV  180
LNTVSNQARA SGNDTRAVKM ILVESQNIIK LGPSKPPLKR NVSMGVNRNN AKGDSNNSKP  240
TRQRKKSGMA TAAAYRKWEK AAIAGVSLVA DAAEHLERAA TVKEVEHDQE NPGENCSDPV  300
DHVLPSLSTL PQNHSVDNNV QNIVKLKLQL FPIDELTRRA LEMDKHNPYL ELTLSTRKKI  360
SSILEHLNRK WGNTSIAVGE LMLFPYGVQK ENLNTYQRWN QESTLSAADI YAAIGSPPLF  420
RLRYGWFSNT EHGTLNMQAP VTSSCTVRQS KNGGDNMKDQ VVNSASLPKP STNNYSTERS  480
VDCETSMNIN GALTSTSTYL PNTRDGGIYQ NTSTEEPCGP TAHISLHVKD VTNGAIARQL  540
EDMDVLKSNS GSGLSAGEWA DSLTNISVGD LLSGVSQDLN YNCMDPLIAD NCRSAHQIPF  600
TSDSFDAAIA AHISRHQDKM GQSTLVSPMS SIWDAEETRD AFSFKKDVIH HDDGPCLSLS  660
ASLDFDKKVP ERSFENLNKL SLEKESLVDD VAQTDPMPMD NCESSADIKY HLAKDFNGLA  720
DMYWPDSLGP LDLEIPSNKY HSDDPILSDS GLNRLIANSL DAFQNCSFFG IDKKETPSTV  780
EAQKTATLSD FKIGSGI*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25651
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2358913e-85AC235891.2 Glycine max clone GM_WBc0069F21, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446203.10.0TSL-kinase interacting protein 1
SwissprotQ8LJT80.0TKI1_ARATH; TSL-kinase interacting protein 1
TrEMBLA0A2Z6N6I10.0A0A2Z6N6I1_TRISU; Uncharacterized protein
STRINGXP_004509588.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF98832531
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36960.20.0TSL-kinase interacting protein 1