PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25463
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 355aa    MW: 40523.5 Da    PI: 7.7301
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25463genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1613.7e-1949143190
                       FAR1   1 kfYneYAkevGFsvrkskskks...krngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevt 79 
                                +fY +Y+k  GFsvrks  kk+   +  + it++ fvCs++g r++++ +  +++r++r  t t+C+a+++v+ +  +g+++v+
  Tp57577_TGAC_v2_mRNA25463  49 EFYYQYGKCKGFSVRKSDDKKKigpDGCKIITNKLFVCSRQGLRDKRHISrLDRKREHRRLTCTKCTARFRVTYKAdKGRFVVS 132
                                6********************9988788899**************999875789999****************9999******* PP

                       FAR1  80 kleleHnHela 90 
                                 +e+ HnHel+
  Tp57577_TGAC_v2_mRNA25463 133 VFEETHNHELT 143
                                *********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.5E-1749143IPR004330FAR1 DNA binding domain
PfamPF105512.6E-29266352IPR018289MULE transposase domain
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
DGDDDDDDDG NDHDFDVEAS IGERAVRINS MTADEIRGMD FGSVDEAYEF YYQYGKCKGF  60
SVRKSDDKKK IGPDGCKIIT NKLFVCSRQG LRDKRHISRL DRKREHRRLT CTKCTARFRV  120
TYKADKGRFV VSVFEETHNH ELTSARYVHL HPVYRKISEA DRAQVDGMQS RGIRTCHIMG  180
YMVAQKGGYG DVGFTKKDLY NYFDKKMRDI VKDGDVAASL HYLNAKSTTD PMLYAEYAAD  240
SSNGRMKSLF WADGTSRSDY FCFGDVVAFD TTYKKNKYNL PLVIFSGCNH HSQTIIFGAA  300
LVSDETTETY KWVLNCFLEC MENKRPKAVV TDGDRAMREA IKEVFPDSTH RLYA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25463
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024640473.10.0protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A2K3LXK30.0A0A2K3LXK3_TRIPR; Uncharacterized protein (Fragment)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.14e-54FAR1-related sequence 5