PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25310
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family M-type_MADS
Protein Properties Length: 280aa    MW: 31469.7 Da    PI: 10.1244
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25310genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF71.85.9e-232773147
                               S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEE CS
                     SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgkly 47
                               kri n++n qvtfskRr g++KKA+ELS+LC+a+va+++fs+  k +
  Tp57577_TGAC_v2_mRNA25310 27 KRITNERNMQVTFSKRRSGLFKKASELSTLCGADVALVVFSPGEKAF 73
                               79***************************************988765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004327.1E-341978IPR002100Transcription factor, MADS-box
PROSITE profilePS5006625.8051979IPR002100Transcription factor, MADS-box
SuperFamilySSF554557.98E-292092IPR002100Transcription factor, MADS-box
CDDcd002651.24E-352088No hitNo description
PRINTSPR004044.4E-212141IPR002100Transcription factor, MADS-box
PfamPF003192.7E-252875IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-214156IPR002100Transcription factor, MADS-box
PRINTSPR004044.4E-215677IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 280 aa     Download sequence    Send to blast
LIFPSLFFVS AMSSGRKSQG RKKIEMKRIT NERNMQVTFS KRRSGLFKKA SELSTLCGAD  60
VALVVFSPGE KAFSFGHPNA DTVIDRYLSR LPSQNNGTVR LIEARRNANV SELHSQLTRL  120
NDALDIEKSR RDELSHMNKM TETQYWWACP FDGMNFSQLG LLKNALAELK KRIPEHANGL  180
VNQGAATQTM TSFAGNGSFS NMYVHHLPNS QYSQMFPKQP FQPNLQQGQM FPEQSFHQNP  240
QQGQMLLEQP FQDPMLQHNL FNFNNIGGGG GEGGYGRFL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6byy_A1e-172087269MEF2 CHIMERA
6byy_B1e-172087269MEF2 CHIMERA
6byy_C1e-172087269MEF2 CHIMERA
6byy_D1e-172087269MEF2 CHIMERA
6bz1_A1e-172087269MEF2 CHIMERA
6bz1_B1e-172087269MEF2 CHIMERA
6bz1_C1e-172087269MEF2 CHIMERA
6bz1_D1e-172087269MEF2 CHIMERA
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25310
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003628107.11e-103agamous-like MADS-box protein AGL62
TrEMBLA0A2K3MRY70.0A0A2K3MRY7_TRIPR; MADS-box transcription factor
STRINGAET025831e-103(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12833331
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.14e-51AGAMOUS-like 62