PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25276
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 401aa    MW: 45459.6 Da    PI: 9.952
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25276genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86.2e-25318376360
                                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
                       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                                D + WrKYGqK+vkgs++pr+YY+C+++ +C ++k ve+s+  +++ ++tY g Hnhek
  Tp57577_TGAC_v2_mRNA25276 318 DRWVWRKYGQKSVKGSPHPRNYYKCSTSnDCLARKLVEKSKIIENTYVVTYIGVHNHEK 376
                                99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.805.4E-23306377IPR003657WRKY domain
PROSITE profilePS5081127.313311377IPR003657WRKY domain
SuperFamilySSF1182901.83E-21312377IPR003657WRKY domain
SMARTSM007741.7E-26316376IPR003657WRKY domain
PfamPF031061.6E-20318375IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 401 aa     Download sequence    Send to blast
MDNGEWDLMS IVHSCKATTF TNPPIIFETS PPPQTPITIT TTNNVISTQN TTPSYFKNFT  60
VTQENNPVSV TPLKPTDFID LDKLRVNFNH DNTLDIPTII SHNPTTSSPI STTTTPTSST  120
ATIPTYITTA PFESVYNHPL VPQQPMSQHN QLPVLQPQTP ITMSTNNIIP PQNTTPSYFD  180
DFTIWRSLDS ISILSKSLQY LTPTPPPSRH SLPLSQPSFL PPPPFPPSPT PLFLPRQLPP  240
SSPISRLLIL TVHAYNHTSI SQQPPRQHNQ LPNLQPETSS RVLPNIYPQQ PKYKSRKRKN  300
YKQVSLVCQV KKENLSLDRW VWRKYGQKSV KGSPHPRNYY KCSTSNDCLA RKLVEKSKII  360
ENTYVVTYIG VHNHEKPLVN DWNSRRLRYY RSLQSSQMGE *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-123183771977Probable WRKY transcription factor 4
2ayd_A2e-123183771674WRKY transcription factor 1
2lex_A2e-123183771977Probable WRKY transcription factor 4
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25276
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52830.11e-28WRKY DNA-binding protein 27