PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA25245
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 568aa    MW: 66043.4 Da    PI: 10.6058
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA25245genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like100.98.4e-32251304255
                    G2-like   2 prlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                prlrWtp+LH++Fv+ave+LGG+e+AtPk +l+lm+v gL+++hvkSHLQ+YR+
  Tp57577_TGAC_v2_mRNA25245 251 PRLRWTPDLHHSFVHAVERLGGQERATPKLVLQLMNVRGLSIAHVKSHLQMYRS 304
                                8****************************************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.5E-30247305IPR009057Homeodomain-like
PROSITE profilePS5129411.739247307IPR017930Myb domain
SuperFamilySSF466892.51E-14249305IPR009057Homeodomain-like
TIGRFAMsTIGR015571.7E-22251306IPR006447Myb domain, plants
PfamPF002491.5E-8252303IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 568 aa     Download sequence    Send to blast
MKILXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  120
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX  180
XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXSNERRN  240
GVRQYVRSKM PRLRWTPDLH HSFVHAVERL GGQERATPKL VLQLMNVRGL SIAHVKSHLQ  300
MYRSKKLDEV GQVLSPTQRS THELGSISHV AHQYSMVPHQ HFKMANGGIV LETNYNQNSY  360
NFHSLLHPSS LSHSKPINLR HNQWYLNHQP LRPSFGSNEV VSSSTALHML QGRSSVASNQ  420
QLQLMDTTAN TTLAPMRPSQ FLEEKRWPPL DIMNNHQYLK KNLHTNIVST FGSTTTSLRP  480
AEVSFGNNTR FRDHLSNINE HHNSFNSSKL QFDPPFRIKL NEETLEKEKK WVPDLQLSLS  540
QTNSNNDGKS DHGFRETKEI NTKLSLS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j4k_A3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J3e-17252306458Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA25245
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013446647.11e-176uncharacterized protein LOC11419043 isoform X2
TrEMBLG7LJE51e-175G7LJE5_MEDTR; MYB-like transcription factor family protein
STRINGAET042501e-176(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30123270
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38300.12e-35G2-like family protein