PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24982

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 306aa MW: 35646.5 Da PI: 9.3019

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24982	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	86.3	3.1e-27	170	225	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvk.gLtlehvkSHLQkYRl 55 k rlrWt+eLHe F++ v+qLGG+ekA Pk+il++m+++ Lt++hvkSHLQkYR+ Tp57577_TGAC_v2_mRNA24982 170 KRRLRWTKELHEPFIKIVNQLGGPEKAKPKAILQMMGLDhMLTISHVKSHLQKYRS 225 68*********************************97359***********7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	10.946	167	228	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-25	168	228	IPR009057	Homeodomain-like
SuperFamily	SSF46689	1.06E-13	169	227	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	5.0E-20	170	225	IPR006447	Myb domain, plants
Pfam	PF00249	1.9E-8	172	224	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 306 aa Download sequence Send to blast
MYINQLELYE HQSFEPYNIV TPLEATFIHD SNANETFYQH NIDIPIWNNE FCMTTKIDSP 60 FLLCQDSKDQ PTTSFHSGLE SLMCGSYEDS ISSSEKCSKF PKPICEQSRS PQQHKKMVET 120 DSAPNQKSFK ISFQRTQLES CTNQDKKSSP YGFDFATSTN FDSKITSKGK RRLRWTKELH 180 EPFIKIVNQL GGPEKAKPKA ILQMMGLDHM LTISHVKSHL QKYRSTLHTH KALKGTSEER 240 KRTDGINELQ VKIQRQIAES QQLQLEVERS NQRQLEMQRN LQLVIEQQRK QLKLMLYQQK 300 QRKQL*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-16	169	225	1	56	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24982

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013467654.1	1e-131	myb family transcription factor PHL5
TrEMBL	A0A072VJ98	1e-130	A0A072VJ98_MEDTR; Myb-like DNA-binding domain, shaqkyf class protein
STRING	XP_004493570.1	8e-68	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF14490	10	16

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	1e-29	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24982