PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24981

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 422aa MW: 47825 Da PI: 6.5818

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24981	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	100.4	1.2e-31	246	300	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWt++LHe+Fve+v++LGG+ekAtPk+il+lm+ +gLt+ hvkSHLQkYR+ Tp57577_TGAC_v2_mRNA24981 246 KTRIRWTQDLHEKFVECVNRLGGAEKATPKAILRLMESDGLTIFHVKSHLQKYRI 300 68****************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.814	243	303	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	2.0E-28	244	301	IPR009057	Homeodomain-like
SuperFamily	SSF46689	7.7E-17	244	300	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	1.3E-23	246	301	IPR006447	Myb domain, plants
Pfam	PF00249	2.2E-8	250	299	IPR001005	SANT/Myb domain
Pfam	PF14379	5.2E-20	330	375	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 422 aa Download sequence Send to blast
MNENKIDYLG RIQQNHILNG DFNSELGNCS SQYFDIRNAS NIGNFSQQYS MEQSPYIVQS 60 QNQGVQGKSS SNTIISRFES PTSAFYATEI CMGFPQYDYQ QVGNNNNGFQ QFSNKVNDLE 120 FPLYQCPREN NNLYLDSTNQ TTSHNFELSN LNTLQPLIRS QLNSDQCCRS PEKSNGGNFL 180 FIDDAATISM SPLIHSNGNH DHKVSCGSYD FPVSQLNFSY QQEKLSPSMS TCSGNHVSNG 240 SSVSSKTRIR WTQDLHEKFV ECVNRLGGAE KATPKAILRL MESDGLTIFH VKSHLQKYRI 300 AKYMPEPAQG KSEKRTHVEN VNLDVKSGLQ IREALQLQLD VQRRLHEQLE IQRKLQLRIE 360 EQGKQLKMMF DQQQKRSSSD QLDTQNLDNT SNNDKPISPK DIEASIFEGS ENNPLFPSKI 420 S*

Sequence ? help Back to Top

Protein Sequence Length: 422 aa Download sequence Send to blast

MNENKIDYLG RIQQNHILNG DFNSELGNCS SQYFDIRNAS NIGNFSQQYS MEQSPYIVQS  60
QNQGVQGKSS SNTIISRFES PTSAFYATEI CMGFPQYDYQ QVGNNNNGFQ QFSNKVNDLE  120
FPLYQCPREN NNLYLDSTNQ TTSHNFELSN LNTLQPLIRS QLNSDQCCRS PEKSNGGNFL  180
FIDDAATISM SPLIHSNGNH DHKVSCGSYD FPVSQLNFSY QQEKLSPSMS TCSGNHVSNG  240
SSVSSKTRIR WTQDLHEKFV ECVNRLGGAE KATPKAILRL MESDGLTIFH VKSHLQKYRI  300
AKYMPEPAQG KSEKRTHVEN VNLDVKSGLQ IREALQLQLD VQRRLHEQLE IQRKLQLRIE  360
EQGKQLKMMF DQQQKRSSSD QLDTQNLDNT SNNDKPISPK DIEASIFEGS ENNPLFPSKI  420
S*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_A	2e-23	246	303	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	2e-23	246	303	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	2e-23	246	303	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	2e-23	246	303	1	58	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	2e-23	246	303	2	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24981

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT138713	1e-80	BT138713.1 Medicago truncatula clone JCVI-FLMt-8G17 unknown mRNA.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013467656.1	0.0	myb family transcription factor PHL5
TrEMBL	A0A072VJR9	0.0	A0A072VJR9_MEDTR; Myb-like transcription factor family protein
STRING	XP_004497904.1	0.0	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3740	34	65

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06800.1	4e-70	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24981