PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24979 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | G2-like | ||||||||
Protein Properties | Length: 164aa MW: 18785.5 Da PI: 10.1062 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 83.6 | 2.2e-26 | 12 | 66 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r Wt +LHe+Fve+v++LGG++kA P++il+lm+ +gLt+ hvk HL kYR+ Tp57577_TGAC_v2_mRNA24979 12 KTRAIWTRDLHEKFVECVNRLGGADKAMPSAILRLMESDGLTIFHVKYHLKKYRI 66 6899**************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.7E-13 | 11 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-22 | 12 | 68 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 5.5E-18 | 12 | 66 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 6.8E-6 | 17 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 1.1E-16 | 107 | 154 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MFASSGSSVS FKTRAIWTRD LHEKFVECVN RLGGADKAMP SAILRLMESD GLTIFHVKYH 60 LKKYRISMAE PAHVDLNSKQ SVNKFSGKSD KRKTHVENVN LDVKSGVQIR EALQLQLDDQ 120 RRLHEQLENQ RYLQLQIEEQ GRQLKMMFDK QHQTCSGQLK SAL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_A | 6e-18 | 12 | 67 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_B | 6e-18 | 12 | 67 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_C | 6e-18 | 12 | 67 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4r_D | 6e-18 | 12 | 67 | 1 | 56 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 6e-18 | 12 | 67 | 2 | 57 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 90 | 94 | KRKTH |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24979 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013467656.1 | 8e-67 | myb family transcription factor PHL5 | ||||
Swissprot | Q0WVU3 | 5e-52 | PHL5_ARATH; Myb family transcription factor PHL5 | ||||
TrEMBL | A0A2K3PFC9 | 1e-73 | A0A2K3PFC9_TRIPR; MYB-like hth transcriptional regulator family protein | ||||
STRING | XP_004497904.1 | 6e-64 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3740 | 34 | 65 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G06800.1 | 1e-46 | G2-like family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24979 |