PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24928 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 73aa MW: 8444.45 Da PI: 8.9815 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 23.5 | 1.3e-07 | 4 | 46 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 +WT+ +l+ +a +++ + +W+ +a+ +g ++ +++ks++ Tp57577_TGAC_v2_mRNA24928 4 SWTARQNKLFEQALALYDREtpdRWHNVAKVVG--KSVEDVKSHY 46 6*****************88************8..9********9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.2E-6 | 1 | 52 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51293 | 13.167 | 1 | 54 | IPR017884 | SANT domain |
Gene3D | G3DSA:1.10.10.60 | 5.2E-4 | 3 | 57 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 2.22E-5 | 4 | 50 | No hit | No description |
Pfam | PF00249 | 2.1E-5 | 4 | 46 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.8E-12 | 4 | 57 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 73 aa Download sequence Send to blast |
MATSWTARQN KLFEQALALY DRETPDRWHN VAKVVGKSVE DVKSHYEILK EDVQSIEHGR 60 VPFPRYKTNT NN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 3e-26 | 5 | 72 | 11 | 79 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24928 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC162787 | 7e-87 | AC162787.39 Medicago truncatula chromosome 8 clone mth2-192c6, complete sequence. | |||
GenBank | BT146570 | 7e-87 | BT146570.1 Medicago truncatula clone JCVI-FLMt-10N5 unknown mRNA. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003629426.1 | 5e-46 | protein RADIALIS-like 1 | ||||
Swissprot | Q1A173 | 7e-28 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | A0A2K3MX34 | 3e-47 | A0A2K3MX34_TRIPR; MYB transcription factor MYB 164 | ||||
STRING | AET03902 | 2e-45 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF154 | 34 | 280 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 3e-30 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24928 |