PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24921 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | HB-other | ||||||||
Protein Properties | Length: 170aa MW: 20014.5 Da PI: 9.064 | ||||||||
Description | HB-other family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 63.1 | 4.1e-20 | 40 | 95 | 1 | 56 |
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 +++ +++t++q+++Le++F+++++p++++r +L+++l L rq+k+WFqNrR+++k Tp57577_TGAC_v2_mRNA24921 40 KKRYHRHTANQIQRLEAMFKECPHPDEKQRLQLSRELALAPRQIKFWFQNRRTQMK 95 678899***********************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 3.97E-21 | 18 | 97 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.8E-22 | 26 | 99 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.686 | 37 | 97 | IPR001356 | Homeobox domain |
SMART | SM00389 | 2.8E-17 | 38 | 101 | IPR001356 | Homeobox domain |
Pfam | PF00046 | 9.9E-18 | 40 | 95 | IPR001356 | Homeobox domain |
CDD | cd00086 | 7.40E-14 | 40 | 98 | No hit | No description |
PROSITE pattern | PS00027 | 0 | 72 | 95 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 170 aa Download sequence Send to blast |
MKLVDQKRTM EYHSGGSGSP GDHHHHHHHH DGSSDSQRRK KRYHRHTANQ IQRLEAMFKE 60 CPHPDEKQRL QLSRELALAP RQIKFWFQNR RTQMKAQHER ADNCQLRAEN DKIRCENIAI 120 REALKNVICP SCGGPPINDD CYFDEQKLRI ENAQLKEEVT KIYQLNFNN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24921 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003549189.1 | 1e-94 | homeobox-leucine zipper protein HDG11 | ||||
Refseq | XP_014624636.1 | 1e-94 | homeobox-leucine zipper protein HDG11 | ||||
Refseq | XP_028206078.1 | 1e-94 | homeobox-leucine zipper protein HDG11-like | ||||
Refseq | XP_028206079.1 | 1e-94 | homeobox-leucine zipper protein HDG11-like | ||||
Swissprot | Q69T58 | 8e-76 | ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8 | ||||
TrEMBL | A0A445GLM0 | 3e-93 | A0A445GLM0_GLYSO; Homeobox-leucine zipper protein HDG11 isoform A | ||||
TrEMBL | I1MQL8 | 3e-93 | I1MQL8_SOYBN; Uncharacterized protein | ||||
STRING | GLYMA16G34350.1 | 5e-94 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1026 | 33 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G73360.1 | 3e-73 | homeodomain GLABROUS 11 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24921 |