PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24826 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 213aa MW: 24977.9 Da PI: 9.4023 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 54.1 | 3.5e-17 | 26 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 rg T++E+ +++d+++++G++ W+tIar ++ gRt++++k++w+++ Tp57577_TGAC_v2_mRNA24826 26 RGQITPQEESIILDLHARWGNR-WSTIARNLP-GRTDNEIKNYWRTH 70 7888******************.*********.************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 4.426 | 1 | 20 | IPR017877 | Myb-like domain |
Gene3D | G3DSA:1.10.10.60 | 2.4E-10 | 6 | 32 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 2.35E-21 | 6 | 77 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 25.048 | 21 | 75 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-15 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.4E-14 | 26 | 70 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.19E-11 | 30 | 71 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 7.8E-20 | 33 | 71 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 213 aa Download sequence Send to blast |
LLTGLRRNGK SCRLRWVNYL RPDLKRGQIT PQEESIILDL HARWGNRWST IARNLPGRTD 60 NEIKNYWRTH FKKKAKNPSD AAEKAKNRFL RKQLFHQQQQ QLQQVQQQQQ QQLQFNLDMK 120 DVVSLFEENN INNHRVPYIS QTRQEMFNMC PNTTEEQSYF MFNGNSSVQD SSADDVLWDD 180 GLWNLDDVHG NFSVANATNK TGLYNLVTPN YC* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1a5j_A | 5e-17 | 7 | 75 | 40 | 108 | B-MYB |
1gv2_A | 6e-17 | 7 | 75 | 37 | 105 | MYB PROTO-ONCOGENE PROTEIN |
1h88_C | 2e-16 | 7 | 75 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h89_C | 2e-16 | 7 | 75 | 91 | 159 | MYB PROTO-ONCOGENE PROTEIN |
1h8a_C | 1e-16 | 7 | 75 | 60 | 128 | MYB TRANSFORMING PROTEIN |
1mse_C | 6e-17 | 7 | 75 | 37 | 105 | C-Myb DNA-Binding Domain |
1msf_C | 6e-17 | 7 | 75 | 37 | 105 | C-Myb DNA-Binding Domain |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24826 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_004497798.1 | 1e-118 | transcription factor MYB24-like | ||||
TrEMBL | A0A2K3NFQ6 | 1e-146 | A0A2K3NFQ6_TRIPR; Transcription factor MYB 21-like protein (Fragment) | ||||
STRING | XP_004497798.1 | 1e-117 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1182 | 34 | 108 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-55 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24826 |