PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24813 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 82aa MW: 9628.81 Da PI: 6.2358 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.6 | 6.1e-13 | 43 | 75 | 1 | 34 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkg 34 +g+WT+eEd ll+++v+ +G g+W+++ar g + Tp57577_TGAC_v2_mRNA24813 43 KGPWTAEEDRLLIEYVRVHGEGRWNSVARLAG-N 75 79****************************99.4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 12.955 | 38 | 81 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 4.35E-10 | 41 | 74 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 0.0044 | 42 | 80 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.0E-12 | 42 | 76 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.2E-11 | 43 | 76 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.25E-8 | 45 | 75 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 82 aa Download sequence Send to blast |
LPTQINFIQT HTNFDTFNFY MYYRGVMAGQ FGHGIMEEEL WRKGPWTAEE DRLLIEYVRV 60 HGEGRWNSVA RLAGNQQPNF F* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24813 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003590181.2 | 1e-28 | transcription factor MYB24 | ||||
TrEMBL | A0A392MMA7 | 5e-31 | A0A392MMA7_9FABA; Myb family transcription factor family protein (Fragment) | ||||
STRING | AES60432 | 2e-27 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27859 | 3 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G13480.1 | 1e-20 | myb domain protein 79 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24813 |