PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24756
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 190aa    MW: 21346.1 Da    PI: 10.2466
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24756genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix52.51.3e-1630122186
                   trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsesss 77 
                                +W+++ + +L++a  e+  +l+rg+l++++W+ev++++         r+ +r+ +qCk++++ l+k+yk +k++ ++   + +s
  Tp57577_TGAC_v2_mRNA24756  30 CWSEDATSTLVDAWGERYVDLNRGNLRQKHWQEVADAVndihaagNNRKARRTDVQCKNRIDTLKKKYKIEKARVSESDGGYQS 113
                                7********************************************99***************************9999999999 PP

                   trihelix  78 tcpyfdqle 86 
                                 +p+f++l+
  Tp57577_TGAC_v2_mRNA24756 114 PWPFFSRLD 122
                                ******997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2628123No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MDSITGGPSP VNFAPPRPPS SSPFPGREDC WSEDATSTLV DAWGERYVDL NRGNLRQKHW  60
QEVADAVNDI HAAGNNRKAR RTDVQCKNRI DTLKKKYKIE KARVSESDGG YQSPWPFFSR  120
LDMLIGDTFP VKKLSPXXXX XXXXXXXXXX XXLSLRGGCC CCGRGGKRGV RGKEVEHWNR  180
KRRQEGKGK*
Functional Description ? help Back to Top
Source Description
UniProtTranscription regulator that may repress the maturation program during early embryogenesis. {ECO:0000269|PubMed:21330492}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24756
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742941e-127AC174294.14 Medicago truncatula clone mth2-71d8, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505493.14e-85trihelix transcription factor ASIL1-like isoform X1
SwissprotQ9LJG83e-35ASIL2_ARATH; Trihelix transcription factor ASIL2
TrEMBLA0A2K3LIA15e-95A0A2K3LIA1_TRIPR; Uncharacterized protein
TrEMBLA0A392PYH64e-95A0A392PYH6_9FABA; Transcription regulation protein (Fragment)
STRINGXP_004505493.12e-84(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18873379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.12e-49sequence-specific DNA binding transcription factors