PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA2472

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

SRS

Protein Properties

Length: 316aa MW: 33904.3 Da PI: 6.1482

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA2472	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	201.7	2.1e-62	102	246	3	154
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsals 87 g++sCqdCGnqakkdC h RCRtCCksrgfdC+thvkstWvpaa+rrerqqq+ +++ + ++ + ++++ + + Tp57577_TGAC_v2_mRNA2472 102 GGGISCQDCGNQAKKDCPHIRCRTCCKSRGFDCQTHVKSTWVPAARRRERQQQQPQQQPHGDGER------DLNNSSLACTRLPI 180 5789********************************************999877644443322......22222122222222 PP DUF702 88 stklssaeskkeletsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154 + +l+ + + l+ ++P+ vs++a frcvrv svd++eee+aY tav+igGhvf+GiLyd+G+++ Tp57577_TGAC_v2_mRNA2472 181 NPSLTVSA-TGLLDEVNFPAVVSTPAEFRCVRVCSVDESEEEYAYSTAVNIGGHVFRGILYDYGPDH 246 22322222.34577778**********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	6.6E-60	104	245	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	3.4E-27	106	148	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	3.6E-23	197	244	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 316 aa Download sequence Send to blast
MAGLFSLGRS EEQNQQNNNN NNPVTEFWYN NNKNNQDSVS AYRGGFEIWN EQPPQHQQQF 60 FPPQQDLYAA ASAGVVLGVG SSRVCSSDEN RSAVFVASGS GGGGISCQDC GNQAKKDCPH 120 IRCRTCCKSR GFDCQTHVKS TWVPAARRRE RQQQQPQQQP HGDGERDLNN SSLACTRLPI 180 NPSLTVSATG LLDEVNFPAV VSTPAEFRCV RVCSVDESEE EYAYSTAVNI GGHVFRGILY 240 DYGPDHGSSS YNMPAGNASS SRGGGVPVQP LELISGVPAG VGVGAIVDPS SLYPAPLNTF 300 MPPSGTQFFP HPRSS*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influences vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Suppressor of the gibberellin (GA) signal transduction. {ECO:0000269\|PubMed:10368174, ECO:0000269\|PubMed:11706176, ECO:0000269\|PubMed:16740146}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA2472

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003612086.1	1e-146	protein SHI RELATED SEQUENCE 1
Swissprot	Q9XGX0	3e-72	SHI_ARATH; Protein SHORT INTERNODES
TrEMBL	A0A2K3NT32	0.0	A0A2K3NT32_TRIPR; Short internode related sequence
STRING	AES95044	1e-146	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF882	34	125

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G51060.1	4e-54	Lateral root primordium (LRP) protein-related

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA2472

Publications ? help Back to Top
Islam MA, et al. Overexpression of the AtSHI gene in poinsettia, Euphorbia pulcherrima, results in compact plants. PLoS ONE, 2013. 8(1): p. e53377 [PMID:23308204] Pfannebecker KC,Lange M,Rupp O,Becker A An Evolutionary Framework for Carpel Developmental Control Genes. Mol. Biol. Evol., 2017. 34(2): p. 330-348 [PMID:28049761] Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]