PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24678 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 236aa MW: 25749.5 Da PI: 7.6898 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 99.4 | 3.4e-31 | 2 | 103 | 1 | 97 |
DUF260 1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgv 79 +C++C+vlr++C++ C+l+p++ p++q +++ +v+k+FG++ ++++++++pe +r+++++sl++eA+ r+ +Pv+Gavg+ Tp57577_TGAC_v2_mRNA24678 2 SCNGCRVLRKGCSETCILRPCLqwietPEAQGHATVFVAKFFGRAGLMSFISNVPEPQRPALFQSLLFEACGRTVNPVNGAVGL 85 6*********************************************************************************** PP DUF260 80 ilklqqqleqlkaelall 97 +++++++++q+++e++l+ Tp57577_TGAC_v2_mRNA24678 86 LWTGNWHVCQAAVETVLR 103 ************998875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 19.741 | 1 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 1.6E-26 | 2 | 101 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 236 aa Download sequence Send to blast |
MSCNGCRVLR KGCSETCILR PCLQWIETPE AQGHATVFVA KFFGRAGLMS FISNVPEPQR 60 PALFQSLLFE ACGRTVNPVN GAVGLLWTGN WHVCQAAVET VLRGGVLRPL PELTLMDAPP 120 VAADEASEAE DGGVDAIWRI RDPNPNFRFT SSRSNNKVSS GVKRRRSEEF VKVPPATNLD 180 LRLTPIFLQK EMENRLPGSP SMNSEESVTT TACLETGIAD RLAHGGERKV LNLFI* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24678 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003608484.1 | 1e-147 | LOB domain-containing protein 38 | ||||
Swissprot | Q9SZE8 | 3e-84 | LBD39_ARATH; LOB domain-containing protein 39 | ||||
TrEMBL | A0A2K3PQT0 | 1e-172 | A0A2K3PQT0_TRIPR; LOB domain-containing protein | ||||
STRING | AES90681 | 1e-147 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF721 | 34 | 136 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37540.1 | 1e-81 | LOB domain-containing protein 39 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24678 |