PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24628
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 528aa    MW: 59546.8 Da    PI: 4.9162
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24628genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY95.24.6e-30284343159
                                ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                ++Dg++WrKYGqK  kg+++pr+YYrCt a gCpv+k+v+r+ +d +++++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA24628 284 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVAtGCPVRKQVQRCIDDMSILITTYEGTHNHP 343
                                58***************************99****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.4E-32269345IPR003657WRKY domain
SuperFamilySSF1182901.26E-27277345IPR003657WRKY domain
PROSITE profilePS5081129.241279345IPR003657WRKY domain
SMARTSM007747.4E-37284344IPR003657WRKY domain
PfamPF031065.2E-27285343IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 528 aa     Download sequence    Send to blast
MGREEESKNM EINLSLKIDS DDDEQGEEVE DQDQVKEDDE KEEVHEATAG EIEDDSSVIQ  60
LSLQDNTKTK EIYQFFTLFS LTFVQSCADP NLYYFIESMI FSFLIIIFLC LSALEMEMES  120
MKEENKVLRK VVEQTMKDYY DLQTKFSVIQ ENNIKRKDHT LSLSLQDNNA TSGEGPSRLI  180
HEIFSEKFER TPSPLPLNNI DHDSISESDL GLSLRLQTRT CEKDIEENKE AGKREQLASF  240
ETVQNKFQRV HELPAGITTH AAAYTPPNRK ARVSVRARCE TATMNDGCQW RKYGQKIAKG  300
NPCPRAYYRC TVATGCPVRK QVQRCIDDMS ILITTYEGTH NHPLPVGATA MASTASAATS  360
FMLLDSSNPN SDYGYTTQQT FNNPYINNTF HHPLNQSSNI RNINPNDPSQ GIVLDLTNNN  420
NLHEPRRFST AGSSSSTSTD QHNFSWMQNK YNQQSSTSSS ANIAMNSFYK PLEIHDRSWK  480
RDQESNNNNN NVTAIASDPK FRLAVAAAIS SLMNKESNNT TTNGSNN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-21271347176WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24628
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by potassium deprivation. {ECO:0000269|PubMed:15173595}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0968481e-108BT096848.1 Soybean clone JCVI-FLGm-15D10 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013457266.20.0probable WRKY transcription factor 9
SwissprotQ9C9F02e-79WRKY9_ARATH; Probable WRKY transcription factor 9
TrEMBLA0A2Z6M2880.0A0A2Z6M288_TRISU; Uncharacterized protein
STRINGXP_004504738.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF93203141
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68150.18e-68WRKY DNA-binding protein 9