PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24544 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | LBD | ||||||||
Protein Properties | Length: 225aa MW: 24864.1 Da PI: 8.374 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 130.4 | 7.6e-41 | 18 | 117 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklq 84 +CaaCk+lrr+Ca++C+++pyf ++p+kfa vhk+FGasnv+k+l ++ e r da++slvyeA++r+rdPvyG++g i++lq Tp57577_TGAC_v2_mRNA24544 18 PCAACKLLRRRCAQECPFSPYFSPHEPQKFASVHKVFGASNVSKMLMEVAECSRADAANSLVYEANVRLRDPVYGCMGAISTLQ 101 7*********************************************************************************** PP DUF260 85 qqleqlkaelallkee 100 qq+++l+ael++l++e Tp57577_TGAC_v2_mRNA24544 102 QQVQSLQAELNVLRSE 117 ***********99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.982 | 17 | 118 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 9.7E-41 | 18 | 115 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 225 aa Download sequence Send to blast |
MGRRHMLGPP GTLNTITPCA ACKLLRRRCA QECPFSPYFS PHEPQKFASV HKVFGASNVS 60 KMLMEVAECS RADAANSLVY EANVRLRDPV YGCMGAISTL QQQVQSLQAE LNVLRSEILK 120 YKLREAANIN MNNMNMNNML QASSHHHVPM LPSNSSVAVS IAAPPPPPPX XXXXXXXXXX 180 XXXXXXXXXX LPPTSNSSSS IYFQERDHNN YSTISSDDNI SYFG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 6e-44 | 10 | 129 | 3 | 122 | LOB family transfactor Ramosa2.1 |
5ly0_B | 6e-44 | 10 | 129 | 3 | 122 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24544 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | LN681821 | 3e-39 | LN681821.1 Cucumis melo genomic scaffold, anchoredscaffold00040. | |||
GenBank | LN713257 | 3e-39 | LN713257.1 Cucumis melo genomic chromosome, chr_3. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602464.1 | 1e-103 | LOB domain-containing protein 15 isoform X1 | ||||
Swissprot | Q9AT61 | 4e-70 | LBD13_ARATH; LOB domain-containing protein 13 | ||||
TrEMBL | A0A2K3PPY3 | 1e-122 | A0A2K3PPY3_TRIPR; LOB domain-containing protein 15-like | ||||
STRING | AES72715 | 1e-103 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF2298 | 34 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G40470.1 | 2e-71 | LOB domain-containing protein 15 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24544 |
Publications ? help Back to Top | |||
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