PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24536 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 229aa MW: 25675.7 Da PI: 6.1224 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 92.9 | 2.3e-29 | 140 | 198 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +dDgy+WrKYG+K+vk+s++pr+YY+C+ ++C vkk+ver++ed ++v +tYeg Hnhe Tp57577_TGAC_v2_mRNA24536 140 MDDGYKWRKYGKKSVKNSPNPRNYYKCSGERCGVKKRVERDREDSSYVLTTYEGVHNHE 198 59********************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.2E-31 | 127 | 200 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 1.7E-26 | 132 | 200 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 29.735 | 135 | 200 | IPR003657 | WRKY domain |
SMART | SM00774 | 6.0E-32 | 140 | 199 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-23 | 141 | 198 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 229 aa Download sequence Send to blast |
MDISYFGNPN ASNPYHHYNK NNNIAPSSSS DFINFSDYLV LDDVVFVDNN NNINNQEYYS 60 SWSQSSETEQ SSDKAASSST TTTAADVVIN QGLISDETSI NNNNTTTTTT IKRKNGGIKE 120 NTVEVSPRIT FRTRSQLEIM DDGYKWRKYG KKSVKNSPNP RNYYKCSGER CGVKKRVERD 180 REDSSYVLTT YEGVHNHESP CTSYYTSPVS SNLVYSDQWT SANSSSSN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 5e-24 | 128 | 200 | 2 | 74 | WRKY transcription factor 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). Involved in defense responses. May act as positive regulator of salicylic acid (SA)-mediated signaling and negative regulator of jasmonic acid (JA)-mediated signaling (PubMed:21030507). {ECO:0000250, ECO:0000269|PubMed:21030507}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24536 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003602498.2 | 1e-88 | probable WRKY transcription factor 51 | ||||
Swissprot | Q93WU9 | 2e-39 | WRK51_ARATH; Probable WRKY transcription factor 51 | ||||
TrEMBL | A0A2K3M630 | 1e-109 | A0A2K3M630_TRIPR; WRKY transcription factor (Fragment) | ||||
STRING | XP_004502873.1 | 2e-71 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1120 | 34 | 110 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G64810.1 | 1e-39 | WRKY DNA-binding protein 51 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24536 |
Publications ? help Back to Top | |||
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