PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24444
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 741aa    MW: 84154.2 Da    PI: 5.2989
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24444genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS363.33.5e-1113647371373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lLl c + v ++d+++a++lL+++++++s  gd+ +R+a+yf+++L+arl++++++     ++ ++++ +++e l+a+++ 
  Tp57577_TGAC_v2_mRNA24444 364 LRNLLLLCSQSVYANDNRNANELLKQIRQHSSALGDASERVAHYFANGLEARLVGNGTNSQVFYSSPSSKRISTAEFLKAYQVH 447
                                6899***************************************************44444433344444445599********* PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                   sP+ kf+++ aN++I + +e++e++HiiDf+i +G+QWp L++ La+R+ gpp+lRiTg++ p +g    e++eetg+rLa
  Tp57577_TGAC_v2_mRNA24444 448 LSSSPFKKFAFFFANKMIIDVAENAETLHIIDFGILYGFQWPILIKFLADREVGPPKLRITGIEFPLPGfrPMEKIEETGRRLA 531
                                ******************************************************************99999************* PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                +++++++vpfefn+++++++e++++e+L++ ++E+++Vn  ++ ++lldes +++s+r++vL+l+++++P +++ +  + ++ns
  Tp57577_TGAC_v2_mRNA24444 532 NYCKRFNVPFEFNAIASRNWETIRVEDLKIGSNEVVVVNTLMRFKNLLDESIEVNSPRNAVLQLIRKINPAIFTQSIVNGSYNS 615
                                **************9999****************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F++rf eal ++sa fd++++ + re+e+r+++E+e lgre++nvvaceg er+er et+++W+ r ++aGFk++pl++k +
  Tp57577_TGAC_v2_mRNA24444 616 PFFATRFREALFHFSAHFDMFDTVILRENEHRMMMEKESLGREAMNVVACEGLERVERPETYKQWQVRNTRAGFKQLPLKSKLM 699
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                ++ ++ l+++++d +  +e+++++++gWk+r L++ ++W
  Tp57577_TGAC_v2_mRNA24444 700 DKFRTKLSQYHKD-FVFDEDNNWMLQGWKGRILYASTCW 737
                                ***********77.************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.456338719IPR005202Transcription factor GRAS
PfamPF035141.2E-108364737IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 741 aa     Download sequence    Send to blast
MDPNFPQAFI NGYYHFDEEG SIVVSGSDPN QYDSFHDADP NQYDNFLDAD PNQYDSFLDA  60
DQLGFAATTF PIEGSMGLVT DPSLEDADFS DTGKFINQIL MEENLDQRPF YDPLSLQITE  120
KSFYDALLHQ NKPPSPNQHP LDIHHSDGTN STSSNNNSNS NSSSSDDSRE MIPLSPDTPV  180
SDLGDHVFQF NSPSISHTFS QPHSTSDALR DLDSSITKMA QNIFTDVDSV SLFKKSLEEA  240
NKFLPPQPQL VTGFESSNFN MVEEKEKPFV LKGRKNHKRE ESYSNEEDEE AARRSSKQSA  300
ISVVDEDELS EMFDKVLLNV EHLPLCKGND CSQTGQVKTE QSPPSNGGKA RPKKKGKKKD  360
TIDLRNLLLL CSQSVYANDN RNANELLKQI RQHSSALGDA SERVAHYFAN GLEARLVGNG  420
TNSQVFYSSP SSKRISTAEF LKAYQVHLSS SPFKKFAFFF ANKMIIDVAE NAETLHIIDF  480
GILYGFQWPI LIKFLADREV GPPKLRITGI EFPLPGFRPM EKIEETGRRL ANYCKRFNVP  540
FEFNAIASRN WETIRVEDLK IGSNEVVVVN TLMRFKNLLD ESIEVNSPRN AVLQLIRKIN  600
PAIFTQSIVN GSYNSPFFAT RFREALFHFS AHFDMFDTVI LRENEHRMMM EKESLGREAM  660
NVVACEGLER VERPETYKQW QVRNTRAGFK QLPLKSKLMD KFRTKLSQYH KDFVFDEDNN  720
WMLQGWKGRI LYASTCWVPA *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A6e-4737173926380Protein SCARECROW
5b3h_A5e-4737173925379Protein SCARECROW
5b3h_D5e-4737173925379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24444
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606669.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K3NP860.0A0A2K3NP86_TRIPR; SCARECROW-like protein 14-like
STRINGAES888660.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]