PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24441
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 729aa    MW: 82403.7 Da    PI: 6.42
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24441genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS369.93.5e-1133557251373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++ L+ cA+ +ss+d   a++lL+++++++sp gd  qRla++f++A++arla++++++y al ++++s    ++ ++a++++
  Tp57577_TGAC_v2_mRNA24441 355 LRTMLILCAQSISSDDRVTAKELLKQIRQHSSPLGDGSQRLAHCFANAIEARLAGTGTQIYTALYSKRNS---AADMVKAYQMY 435
                                5789**********************************************************99999888...89********* PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                  ++P+ k++ + aN++Il+ +++ e++Hi+Df+i +G+QWpaL+  L++Rp+gpp+lR+Tg++ p++g   +e+++etg rLa
  Tp57577_TGAC_v2_mRNA24441 436 ISACPFKKLAIIFANHTILNLAKEVETLHIVDFGIRYGFQWPALIYRLSKRPGGPPKLRLTGIELPQPGfrPAERVQETGLRLA 519
                                ********************************************************************9*************** PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                +++e+++vpfefn+ +a+++e++++e+L+++++E l+Vn++ + ++llde+v l+s+rd+vLkl+k+ +P++++++  + ++n+
  Tp57577_TGAC_v2_mRNA24441 520 RYCERFNVPFEFNA-IAQKWETVKVEDLKIQKNELLVVNCICRFKNLLDETVVLNSPRDAVLKLIKNANPNIFIHTTVNGSYNA 602
                                **************.7******************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F++rf eal +ys++fd l+++++re+  r + E+e+ gre++n +aceg+er+er et+++W+ r  +aGF+++pl+++  
  Tp57577_TGAC_v2_mRNA24441 603 PFFVTRFKEALFHYSTMFDVLDVNVAREDPMRLMFEKEFWGREVMNTIACEGSERVERPETYKQWQVRNIRAGFRQLPLDKHLI 686
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                ++ ++ l+ v+   +++ e+ +++++gWk+r +++ S+W
  Tp57577_TGAC_v2_mRNA24441 687 NKLRCKLKDVYHSDFMLVEDGNCMLQGWKGRIVYASSCW 725
                                ***********777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098566.102329706IPR005202Transcription factor GRAS
PfamPF035141.2E-110355725IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 729 aa     Download sequence    Send to blast
MDPRFSSNYT NGFKSNQIPT TLDGFIDNPF LHPPHDPNTE EDSPLDETDF SATVLRYINQ  60
MLMEEDMEKK PCMFHDSLAL QAAEKSFYEV IGETYPSSSS IQNHHNVDSP NDSNFSSYSN  120
CGTTTSSSNS VEFESYWSNF DVSEYKPSIL QTAFPADFVF QASSMNGYGT STTSTGSSNF  180
GVTNSGFSVS SRDGFPDSNL FSKSESVLQF ERGVEEANKF LPKANPLVID LENNHPFIPS  240
FRKVPQEVVV KTESSEREHF SVESRGRKNH ERGDETDLQD ERSNKQSAVY TDDSEISELF  300
DKVLLGTGCR KEGDPKEEKP NEQVTGVQQK EEANNSGGGK SRAKKQGNKK GVVDLRTMLI  360
LCAQSISSDD RVTAKELLKQ IRQHSSPLGD GSQRLAHCFA NAIEARLAGT GTQIYTALYS  420
KRNSAADMVK AYQMYISACP FKKLAIIFAN HTILNLAKEV ETLHIVDFGI RYGFQWPALI  480
YRLSKRPGGP PKLRLTGIEL PQPGFRPAER VQETGLRLAR YCERFNVPFE FNAIAQKWET  540
VKVEDLKIQK NELLVVNCIC RFKNLLDETV VLNSPRDAVL KLIKNANPNI FIHTTVNGSY  600
NAPFFVTRFK EALFHYSTMF DVLDVNVARE DPMRLMFEKE FWGREVMNTI ACEGSERVER  660
PETYKQWQVR NIRAGFRQLP LDKHLINKLR CKLKDVYHSD FMLVEDGNCM LQGWKGRIVY  720
ASSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A3e-4936272725379Protein SCARECROW
5b3h_D3e-4936272725379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24441
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012572738.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A2K3NP870.0A0A2K3NP87_TRIPR; SCARECROW-like protein 14-like
STRINGXP_004505854.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]