PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24436

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

GRAS

Protein Properties

Length: 604aa MW: 69712.5 Da PI: 5.5429

Description

GRAS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24436	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	GRAS	138.2	8.7e-43	237	392	1	154
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 l++lLl c +av ++d+++a++lL+++++++sp gd+ +R+a+yf+++L+arl++ + + ++ +t + + +e l+a+++ Tp57577_TGAC_v2_mRNA24436 237 LRNLLLLCSQAVYANDNRNANELLKQIRQHSSPFGDASERVAHYFANGLEARLVGDGARAQTFHSSPSTMRITAAEFLKAHQVH 320 6899*************************************************7777665555555555679****** PP GRAS 85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..s 154 + P+ kf++l N++I++ ++++e +HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p +g Tp57577_TGAC_v2_mRNA24436 321 FISPPFQKFTYLFSNKMIMKVAKKAEILHIIDFGILYGFQWPMLIKYLSNREGGPPKLRITGIEYPLPGfrP 392 *************************************************************997665544 PP
2	GRAS	170.5	1.3e-52	419	600	192	373
GRAS 192 eeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleakl 275 ++L+++++E++aV+++ + ++lldes +++s+rdevL+l+++++P++++++ + ++ns+ F++rf eal ++sa++d+l++ + Tp57577_TGAC_v2_mRNA24436 419 SNLKIESNEVIAVKCMTRFKNLLDESIEVNSPRDEVLHLIRKINPDIFTLSVINGSYNSPFFATRFREALFHFSAIYDMLDTVM 502 789******************************************************************************* PP GRAS 276 preseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359 pre+e r+++Ere+lgre++nvvaceg er+er et++ W+ r ++aGFk++pl+++ +++ +++ ++ + + + +e++++++ Tp57577_TGAC_v2_mRNA24436 503 PRENELRTMIEREILGREVMNVVACEGLERVERPETYKLWQVRNTKAGFKQLPLDSELMAKLRTMFKQWYHRDFDFDEDNNWML 586 ******************************************************************999******* PP GRAS 360 lgWkdrpLvsvSaW 373 +gWk+r L++ ++W Tp57577_TGAC_v2_mRNA24436 587 QGWKGRILYASTCW 600 ************ PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50985	51.776	211	581	IPR005202	Transcription factor GRAS
Pfam	PF03514	3.0E-40	237	392	IPR005202	Transcription factor GRAS
Pfam	PF03514	4.5E-50	419	600	IPR005202	Transcription factor GRAS

Sequence ? help Back to Top
Protein Sequence Length: 604 aa Download sequence Send to blast
MDYSNCDDEF QQGYMEDTDF SETTKFITQI LMEENFDLRP YYDPLSLQIT EKSFFDALSP 60 NQHPLHFHNS DEIISSTSSN NNSNSNSSTK PLSTSVSDGF VDLDSSITNL LAQNIFSNAD 120 SVSQFKRGFE EAKKFLPPQP QLLTSLESSN FNMVEEKENP FVLNGRKNHE REEEEEGGRN 180 NKQSAFNVVD EDELSEMFDK VLLNLENDYL PHEKPPSTNG AKALPKKRNI KNKTIDLRNL 240 LLLCSQAVYA NDNRNANELL KQIRQHSSPF GDASERVAHY FANGLEARLV GDGARAQTFH 300 SSPSTMRITA AEFLKAHQVH FISPPFQKFT YLFSNKMIMK VAKKAEILHI IDFGILYGFQ 360 WPMLIKYLSN REGGPPKLRI TGIEYPLPGF RPTERIEEXX XXXXXXXXXX XXXXXMFHSN 420 LKIESNEVIA VKCMTRFKNL LDESIEVNSP RDEVLHLIRK INPDIFTLSV INGSYNSPFF 480 ATRFREALFH FSAIYDMLDT VMPRENELRT MIEREILGRE VMNVVACEGL ERVERPETYK 540 LWQVRNTKAG FKQLPLDSEL MAKLRTMFKQ WYHRDFDFDE DNNWMLQGWK GRILYASTCW 600 VSA*

Sequence ? help Back to Top

Protein Sequence Length: 604 aa Download sequence Send to blast

MDYSNCDDEF QQGYMEDTDF SETTKFITQI LMEENFDLRP YYDPLSLQIT EKSFFDALSP  60
NQHPLHFHNS DEIISSTSSN NNSNSNSSTK PLSTSVSDGF VDLDSSITNL LAQNIFSNAD  120
SVSQFKRGFE EAKKFLPPQP QLLTSLESSN FNMVEEKENP FVLNGRKNHE REEEEEGGRN  180
NKQSAFNVVD EDELSEMFDK VLLNLENDYL PHEKPPSTNG AKALPKKRNI KNKTIDLRNL  240
LLLCSQAVYA NDNRNANELL KQIRQHSSPF GDASERVAHY FANGLEARLV GDGARAQTFH  300
SSPSTMRITA AEFLKAHQVH FISPPFQKFT YLFSNKMIMK VAKKAEILHI IDFGILYGFQ  360
WPMLIKYLSN REGGPPKLRI TGIEYPLPGF RPTERIEEXX XXXXXXXXXX XXXXXMFHSN  420
LKIESNEVIA VKCMTRFKNL LDESIEVNSP RDEVLHLIRK INPDIFTLSV INGSYNSPFF  480
ATRFREALFH FSAIYDMLDT VMPRENELRT MIEREILGRE VMNVVACEGL ERVERPETYK  540
LWQVRNTKAG FKQLPLDSEL MAKLRTMFKQ WYHRDFDFDE DNNWMLQGWK GRILYASTCW  600
VSA*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3g_A	3e-38	225	601	2	379	Protein SCARECROW
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24436

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_003606667.1	0.0	scarecrow-like protein 14
TrEMBL	A0A2K3MRZ3	0.0	A0A2K3MRZ3_TRIPR; SCARECROW-like protein 14-like (Fragment)
STRING	AES88864	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF131	34	339

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G07530.1	1e-149	SCARECROW-like 14

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24436