PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24432
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 658aa    MW: 73906.2 Da    PI: 6.3125
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24432genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS370.81.8e-1132896543373
                       GRAS   3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfse 86 
                                +lL++cA+av s d+++a+ +L+++++++s +gd +qRla+yf+ +L+arl+  ++ +yk+l++s++     ++ l+a+k++  
  Tp57577_TGAC_v2_mRNA24432 289 TLLTQCAQAVGSYDQRNANDILKQIRQHSSAHGDGLQRLAHYFADGLEARLSA-GTPMYKQLQSSSS-----ADMLKAYKVYIT 366
                                69**************************************************9.8889987776666.....59********** PP

                       GRAS  87 vsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakf 168
                                +sP+ ++s+++aN++Il  +++++ +HiiDf++ +G+QWp+L+q L++ p+gpp+lRiTg++ p++g   +e++eetg+rL+k+
  Tp57577_TGAC_v2_mRNA24432 367 ASPFQRMSNFLANRTILGLAQNKSSLHIIDFGVFYGFQWPCLIQRLSEMPQGPPRLRITGIDLPQPGfrPAERVEETGRRLEKY 450
                                ******************************************************************9***************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnses 252
                                ++++gvpfe+n  +a+++++++le+L+++++E+++Vn+ ++l++l de+v+ + +rd+vL+l+++++P+++++   +  +n++ 
  Tp57577_TGAC_v2_mRNA24432 451 CKRFGVPFEYNC-LAQKWDTIRLEDLKIDREEVTVVNCLYRLKNLSDETVTANCPRDAVLRLIRKINPNIFIHGVVNGTYNAPF 533
                                ************.6********************************************************************** PP

                       GRAS 253 FlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakq 336
                                Fl+rf eal ++s+lfd+lea++pre+  r + E+ l+gr++vnv+acegaer+er et+++W+ r ++a Fk++pl  + ++ 
  Tp57577_TGAC_v2_mRNA24432 534 FLTRFREALFHFSSLFDMLEATVPREDPYRLMFEKGLFGRDAVNVIACEGAERVERPETYKQWQVRNKRARFKQLPLAPELVDR 617
                                ************************************************************************************ PP

                       GRAS 337 aklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +k +++k + + + v+e+ +++++gWk+r L +vS+W
  Tp57577_TGAC_v2_mRNA24432 618 VKEMVKKEYPKDFVVDEDGKWVLQGWKGRILHAVSCW 654
                                ********9777************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098564.289261635IPR005202Transcription factor GRAS
PfamPF035146.2E-111289654IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 658 aa     Download sequence    Send to blast
MLSTDTLVEN FPGSVNGCMF GNIPVSVFSN QNPENGFKFE DSNSISISPS THSDSPNDSG  60
TTSNVESSES SKYSNPILRF ISDILMDEED YLEKKPCMLQ DCLKLQAAEK SFYDVLGNNN  120
NNNFGAGTVT STSSESYSNS SYTTDNSVVD YDSPENNAYE VFDKMPQAVF NFPSDAWNMN  180
QEGTLILGSR GGSREKRGLL MNDVGILHEE DLRSSKVSAV YSDDSELSEM FDEVLLCKDG  240
KSPSIFGANS EPSSHSHVSS SLGSNGKTSR SKKGSNKVKK LSSTVDLWTL LTQCAQAVGS  300
YDQRNANDIL KQIRQHSSAH GDGLQRLAHY FADGLEARLS AGTPMYKQLQ SSSSADMLKA  360
YKVYITASPF QRMSNFLANR TILGLAQNKS SLHIIDFGVF YGFQWPCLIQ RLSEMPQGPP  420
RLRITGIDLP QPGFRPAERV EETGRRLEKY CKRFGVPFEY NCLAQKWDTI RLEDLKIDRE  480
EVTVVNCLYR LKNLSDETVT ANCPRDAVLR LIRKINPNIF IHGVVNGTYN APFFLTRFRE  540
ALFHFSSLFD MLEATVPRED PYRLMFEKGL FGRDAVNVIA CEGAERVERP ETYKQWQVRN  600
KRARFKQLPL APELVDRVKE MVKKEYPKDF VVDEDGKWVL QGWKGRILHA VSCWVPA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_A9e-4729365624379Protein SCARECROW
5b3h_D9e-4729365624379Protein SCARECROW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24432
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1742900.0AC174290.6 Medicago truncatula clone mth2-52e11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004507177.10.0scarecrow-like protein 30
TrEMBLA0A2K3MTJ40.0A0A2K3MTJ4_TRIPR; SCARECROW-like protein 14-like
STRINGXP_004507177.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-177SCARECROW-like 14