PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24427
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family FAR1
Protein Properties Length: 388aa    MW: 44276.6 Da    PI: 9.4566
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24427genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.73.4e-2221107190
                       FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtklele 84 
                                kf+ +Y+ke GF vrk++s+k+ ++g+i + +fvC keg+r+++ k+   +++++aetrt+C+a++ ++++ d+k++++++++ 
  Tp57577_TGAC_v2_mRNA24427  21 KFWAAYGKEKGFGVRKQYSNKK-KDGSIRSCRFVCCKEGHRTKNLKS-LLAKNPKAETRTDCEARIALSRK-DEKFVIHEFVEA 101
                                69***************99997.8899*****************999.999*******************9.9*********** PP

                       FAR1  85 HnHela 90 
                                HnH+l+
  Tp57577_TGAC_v2_mRNA24427 102 HNHPLQ 107
                                ****96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.2E-1821107IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 388 aa     Download sequence    Send to blast
MTIVTTPSVG MKFDNVNEAW KFWAAYGKEK GFGVRKQYSN KKKDGSIRSC RFVCCKEGHR  60
TKNLKSLLAK NPKAETRTDC EARIALSRKD EKFVIHEFVE AHNHPLQIPE TTHMLASHRK  120
ISEVQAYEIE MAEDSGLMQK ASFQLMSAHV GGRANLGYTR LDAKNYLKER RKRRMLFGEV  180
GSVMQYFQKQ LLENPSFYHA YQMDCEEQIT NVFWTDARMI LDYGYFGQLC SIMIKFVADV  240
SSSESLSQLA KEGLQDLYKK CIVTEASGFK QRPGLKRQKR LKSCLELSRQ KKRQKPTIKP  300
SSTQQSNGIK SLSQVECTST TASLAHPTYS YSQTTRHLPT QQFVDIESPS QMECATSSLE  360
HPAYVLSQTT ENQFSFTELL MESHVDK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24427
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027191115.11e-113protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A2Z6N1360.0A0A2Z6N136_TRISU; Uncharacterized protein
STRINGXP_004506622.11e-112(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF30451449
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.16e-33FAR1-related sequence 5