PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24419
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 602aa    MW: 69301.7 Da    PI: 6.1345
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24419genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS353.63e-1082245981373
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lLl c +av ++d+++a++lL+++++++sp gd+ +Rla+yf++ L+arl++ + +     ++ +t + + +e l+a+++ 
  Tp57577_TGAC_v2_mRNA24419 224 LRNLLLLCSQAVYANDHRNANELLKQIRQHSSPFGDASERLAHYFANRLEARLVGDGAGAKTFHSSPSTMRITAAEFLKAYQVH 307
                                6899***************************************************7776665555555555669********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLa 166
                                +   P+ kf++l aN++I++ ++++e++HiiDf+i +G+QWp L++ L++R++gpp+lRiTg++ p +g   +e++eetg+ La
  Tp57577_TGAC_v2_mRNA24419 308 FMSPPFKKFAYLFANKMIMKVAKKAETLHIIDFGILYGFQWPLLIKYLSNREGGPPKLRITGIEYPLPGfrPTERIEETGRCLA 391
                                ******************************************************************99999************* PP

                       GRAS 167 kfAeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhns 250
                                +++++++vpfe+nv+ ++++e++++e+L+++++E+++ +++++ ++lldes +++s+rdevL+l+++++P++++++  + ++ns
  Tp57577_TGAC_v2_mRNA24419 392 NYCKRFNVPFEYNVIGSRNWEAIRVEDLKIESNEVIVGKCMMRFKNLLDESIEVNSPRDEVLHLIRKINPDIFTLSVINGSYNS 475
                                **************9999****************************************************************** PP

                       GRAS 251 esFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaa 334
                                + F++rf eal ++sa++d+l++ +pre+e r+++Ere++gre++nvvaceg er+er  t++ W+ r ++aGFk++pl+++ +
  Tp57577_TGAC_v2_mRNA24419 476 PFFATRFREALFHFSAIYDMLDTVMPRENELRTMIEREIMGREVMNVVACEGLERVERPVTYKLWQVRNTKAGFKQLPLDQELM 559
                                ************************************************************************************ PP

                       GRAS 335 kqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                ++ ++ l++ + + +  +e+++++++gWk+r L++ ++W
  Tp57577_TGAC_v2_mRNA24419 560 AKLRTKLKQWYHRDFDFDEDNNWMLQGWKGRILYASTCW 598
                                ***********999************************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098562.987198579IPR005202Transcription factor GRAS
PfamPF035141.0E-105224598IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 602 aa     Download sequence    Send to blast
MDYSNCDYEF QQGSMEDTDF SETIKFITQI LMEENFDQRP YYDPLSLQIT EKSFFNALSP  60
NQRISSTSNS STKPLSPDTL VSDLGTHVFQ FNSPLSTSVS DGHVDLDSSI TNLGFEEANK  120
FLPPQPQLLT SLESSNFNMV SEKQNPFVLK GRKNHEREEN EEERRNNKLS AIGGVVDEDE  180
LSEMFDKALL NVENDCFPNE KTPSDNGAKA LPKKRNSKNE TVDLRNLLLL CSQAVYANDH  240
RNANELLKQI RQHSSPFGDA SERLAHYFAN RLEARLVGDG AGAKTFHSSP STMRITAAEF  300
LKAYQVHFMS PPFKKFAYLF ANKMIMKVAK KAETLHIIDF GILYGFQWPL LIKYLSNREG  360
GPPKLRITGI EYPLPGFRPT ERIEETGRCL ANYCKRFNVP FEYNVIGSRN WEAIRVEDLK  420
IESNEVIVGK CMMRFKNLLD ESIEVNSPRD EVLHLIRKIN PDIFTLSVIN GSYNSPFFAT  480
RFREALFHFS AIYDMLDTVM PRENELRTMI EREIMGREVM NVVACEGLER VERPVTYKLW  540
QVRNTKAGFK QLPLDQELMA KLRTKLKQWY HRDFDFDEDN NWMLQGWKGR ILYASTCWVP  600
A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4723160026380Protein SCARECROW
5b3h_A2e-4723160025379Protein SCARECROW
5b3h_D2e-4723160025379Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24419
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606667.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLG7JUT40.0G7JUT4_MEDTR; GRAS family transcription factor
STRINGAES888640.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF13134339
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.11e-179SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]