PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24396
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family G2-like
Protein Properties Length: 274aa    MW: 30647.5 Da    PI: 11.0463
Description G2-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24396genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like95.63.9e-3078131155
                    G2-like   1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                +prl+Wtp+LH+rFv++v++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl
  Tp57577_TGAC_v2_mRNA24396  78 RPRLVWTPQLHKRFVDVVAHL-GIKNAVPKTIMQLMNVEGLTRENVASHLQKYRL 131
                                59*******************.********************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.08E-1975135IPR009057Homeodomain-like
PROSITE profilePS5129410.06175134IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.1E-3077136IPR009057Homeodomain-like
TIGRFAMsTIGR015571.2E-2379131IPR006447Myb domain, plants
PfamPF002494.3E-881130IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0042753Biological Processpositive regulation of circadian rhythm
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
LGKRFTQSSR SNSTFHGVNS TGVSFRFQHL PGASPYTHXX XXXXXXXXXX XXXXXXXXXX  60
XXXXXXSAVR TTETTLKRPR LVWTPQLHKR FVDVVAHLGI KNAVPKTIMQ LMNVEGLTRE  120
NVASHLQKYR LYLKRMQGLS NDAPSSSDHL FASTPVPQSL QLQQHESVSA NNHSHSHSNG  180
HGIGNGNNSH SHHSVTIPMP YPPPPTMMTM PPMLGMGHHH PHHHPHGPMG MSLPPPSGSN  240
SYRSHPFNMM HHRDWPPNPH SHHPHMSAND SNK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lxu_A1e-3478134157Transcription factor LUX
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00014PBMTransfer from AT3G46640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24396
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU3111936e-78KU311193.1 Pisum sativum subsp. sativum clone NGB102814 sterile nodes (SN) gene, complete cds.
GenBankKU3111946e-78KU311194.1 Pisum sativum subsp. sativum clone NGB17871 sterile nodes (SN) gene, complete cds.
GenBankKU3111956e-78KU311195.1 Pisum sativum subsp. sativum clone NGB10660 sterile nodes (SN) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003606714.15e-75transcription factor PCL1
TrEMBLA0A392P5J61e-103A0A392P5J6_9FABA; Transcription factor PCL1 (Fragment)
STRINGAES889112e-74(Medicago truncatula)
STRINGAES889282e-74(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69573347
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G46640.25e-52G2-like family protein