PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24336
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 263aa    MW: 29109.5 Da    PI: 7.9621
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24336genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.32.1e-1165112354
                                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                ++h+e+E+rRR+riN  +++Lr l+ +     ++K++Ka+ L k++  +k+L
  Tp57577_TGAC_v2_mRNA24336  65 KNHSEAEKRRRERINGHLATLRGLVTST----DQKMDKATLLAKVICQVKEL 112
                                58************************98....8************9888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088813.86562112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.5E-965112IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.58E-1265114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.87E-1065114No hitNo description
Gene3DG3DSA:4.10.280.106.1E-1366116IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.3E-968118IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.30.70.2600.001148198No hitNo description
CDDcd048730.00778151194No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 263 aa     Download sequence    Send to blast
MSYIFYDKIS SSGYDDLGLL NQSLHNFGTS NGVLESGKGK VVKCPITERV GKDDISEAKA  60
LAALKNHSEA EKRRRERING HLATLRGLVT STDQKMDKAT LLAKVICQVK ELKKNAMEAS  120
KGFLIPMEDD EVKVEPYDIE LGHGCMSYKA TICCDYQPEI LSDLKKALDA LQLQLVKVEM  180
STLENRMKNV FVFTCCKGDN SVNVETCKSI ANVVHKALDS VLEKAYSSME FSLRTSYPNK  240
RRRMCFAETS TSSCNHGSCC SC*
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24336
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004505138.11e-147transcription factor bHLH106-like
TrEMBLA0A2K3PFX00.0A0A2K3PFX0_TRIPR; Transcription factor bHLH30-like protein
STRINGXP_004505138.11e-146(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89863143
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G40200.13e-26bHLH family protein