PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA24323

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 168aa MW: 18344.8 Da PI: 8.0587

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA24323	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	14.5	6.7e-05	56	95	10	54
HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 + R +++ +++ L++l+ + +K + +++L++A++YI L Tp57577_TGAC_v2_mRNA24323 56 KDRKEKLGERIVALQQLVSPY-----GKTDTSSVLKEAMDYIEFL 95 667788889999999999999.....9***************988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	11.35	46	95	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	0.0026	52	101	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	8.1E-9	52	115	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.31E-11	53	113	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	4.91E-5	56	100	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 168 aa Download sequence Send to blast
MIASSFNNAD SMFSNEEGID VRKMMGHKRS LCSVDQSNYN SIASKKQKPD LSISTKDRKE 60 KLGERIVALQ QLVSPYGKTD TSSVLKEAMD YIEFLHKQVK LLSAPYLETS PAAQMQGTES 120 CSSLRSRGLC LVPVSFTIGV AEGNGADIWA PIKTTSPKHE NDVSQIQ*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA24323

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	KT031098	1e-153	KT031098.1 Glycine max clone HN_CCL_42 bHLH transcription factor (Glyma02g15520.1) mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004505158.1	1e-108	transcription factor bHLH153 isoform X1
Swissprot	Q7XJU2	5e-53	BH153_ARATH; Transcription factor bHLH153
TrEMBL	A0A2K3NMJ4	1e-110	A0A2K3NMJ4_TRIPR; Transcription factor bHLH
STRING	XP_004505158.1	1e-108	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF10813	31	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G05710.5	6e-47	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA24323

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]