PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA2431
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family DBB
Protein Properties Length: 187aa    MW: 20420.1 Da    PI: 7.4071
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA2431genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box22.72.1e-07433534
                  zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                               C+ +e+  ++ fC  ++  lC+ C ++ H
  Tp57577_TGAC_v2_mRNA2431  4 LCDACESAAAIVFCAADEAALCRACDEKVH 33
                              7**************************998 PP
2zf-B_box30.85.8e-105291237
                  zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....H 37
                              + ++C+ +e+ ++ ++Ce++++ lC +C +  H g    H
  Tp57577_TGAC_v2_mRNA2431 52 DVPRCDICENAPAFFYCETDGSSLCLQCDMIVHVGgkrtH 91
                              5799**************************9995544455 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003364.4E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.239147IPR000315B-box-type zinc finger
PfamPF006437.5E-6342IPR000315B-box-type zinc finger
CDDcd000211.44E-6345No hitNo description
SuperFamilySSF578459.61E-64886No hitNo description
SMARTSM003362.1E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.1585196IPR000315B-box-type zinc finger
PfamPF006439.3E-85290IPR000315B-box-type zinc finger
CDDcd000211.89E-75484No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010100Biological Processnegative regulation of photomorphogenesis
GO:0070370Biological Processcellular heat acclimation
GO:0071483Biological Processcellular response to blue light
GO:0005634Cellular Componentnucleus
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 187 aa     Download sequence    Send to blast
MRTLCDACES AAAIVFCAAD EAALCRACDE KVHMCNKLAS RHVRVGLASP SDVPRCDICE  60
NAPAFFYCET DGSSLCLQCD MIVHVGGKRT HGRYLLFRQR VEFPGDKPSN ADNPASQPLD  120
PGDIKRGQSP LPKQKSGEKQ QNNHRMPPVP TSEPDAGGNT KMDNKLIDLN MKPNNRIHEH  180
ASNHQP*
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA2431
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003612128.11e-130B-box zinc finger protein 18 isoform X2
SwissprotC0SVM56e-72BBX19_ARATH; B-box zinc finger protein 19
TrEMBLG7KGE41e-129G7KGE4_MEDTR; Putative transcription factor interactor and regulator Znf-B family
STRINGAES950861e-129(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.13e-74DBB family protein