PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA24241
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 550aa    MW: 61211.9 Da    PI: 7.1757
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA24241genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY73.42.9e-23488542659
                                -EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   6 nWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                +WrKYGqK++k s++pr+Y rC+   gC ++k ver+++d +++++tY geH h+
  Tp57577_TGAC_v2_mRNA24241 488 SWRKYGQKPIKRSPYPRGYSRCSGLkGCLARKLVERNKSDLTMFIVTYIGEHSHP 542
                                6**********************887****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PIRSFPIRSF0077472.2E-1422510IPR007306tRNA A64-2'-O-ribosylphosphate transferase
PfamPF171845.8E-9627327IPR033449Rit1, N-terminal domain
Gene3DG3DSA:3.90.190.104.9E-8384474IPR029021Protein-tyrosine phosphatase-like
SuperFamilySSF527996.36E-6392477IPR029021Protein-tyrosine phosphatase-like
PfamPF041797.4E-17417483IPR033421Rit1, DUSP-like domain
SMARTSM007741.1E-23488543IPR003657WRKY domain
SuperFamilySSF1182902.75E-20488544IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-22488544IPR003657WRKY domain
PfamPF031064.2E-19488542IPR003657WRKY domain
PROSITE profilePS5081126.59489544IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0019988Biological Processcharged-tRNA amino acid modification
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043399Molecular FunctiontRNA A64-2'-O-ribosylphosphate transferase activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 550 aa     Download sequence    Send to blast
MEVSSEAEWS SSSSSSKLSI YKAARNIKKR DNSLYNALRS LYQDSVFVSE ISELWPQLPL  60
LANLRCGLWY SSNFHSTCYF KSTDGHTNNC SFSTSRLNLH VAHLAAQKGG CMIVDSTRRG  120
KRFPDSMSKT IPIWTCVLNR AIAHYRRDFH IDNAAAAALP QKSEDFVSNG CGEIAREDGS  180
CDWDCSLHLP LWVPQTEKAS IEEHLEEWTQ QLKASGADIA SLASSLKKPL RPLWISQKTV  240
IWLNEVPHHD SWDFTPIILV SASSSSNNVS QHNRTTSEFS WNYIPGAGDD EESWSRGLSP  300
PLFWNNVYDL INSGPELCNQ KVAEIVEKSR VRRAYKGENA PQIRVKSLSH EEPSLSSDIT  360
NVEVDTQASE GFDISWLGST NLAVGASQFA TNAVDVDCIL NCDRESISVS LPSAEAYLHL  420
PMVSSKFDRF SLLNNLPKAV SFAKLNLNQG KRLLVCCNNG EDISVCVCLS ILMSLFDEQA  480
ISSSAPESWR KYGQKPIKRS PYPRGYSRCS GLKGCLARKL VERNKSDLTM FIVTYIGEHS  540
HPAPTHRIS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-134895442074WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA24241
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1529190.0AC152919.23 Medicago truncatula clone mth2-21g11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003630717.10.0uncharacterized protein C3F10.06c
TrEMBLG7L7G10.0G7L7G1_MEDTR; Initiator tRNA phosphoribosyl-transferase, putative
STRINGXP_004503482.10.0(Cicer arietinum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01250.12e-28WRKY family protein