PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24207 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 92aa MW: 10563.7 Da PI: 10.6277 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 102.3 | 1.8e-32 | 12 | 62 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 krienk+nrqvtf+kRrng+lKKA+ELSvLCdaeva+iifs++gklye++s Tp57577_TGAC_v2_mRNA24207 12 KRIENKINRQVTFAKRRNGLLKKAYELSVLCDAEVALIIFSTRGKLYEFCS 62 79***********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 33.417 | 4 | 64 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 5.6E-41 | 4 | 63 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 6.15E-31 | 5 | 68 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.06E-37 | 5 | 64 | No hit | No description |
PROSITE pattern | PS00350 | 0 | 6 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-33 | 6 | 26 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 4.9E-27 | 13 | 60 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-33 | 26 | 41 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 1.6E-33 | 41 | 62 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 92 aa Download sequence Send to blast |
MKRMGRGRVE LKRIENKINR QVTFAKRRNG LLKKAYELSV LCDAEVALII FSTRGKLYEF 60 CSTSKYAIFL SINFSCLFIF LIVKSIILSF C* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6bz1_A | 2e-20 | 4 | 70 | 1 | 67 | MEF2 CHIMERA |
6bz1_B | 2e-20 | 4 | 70 | 1 | 67 | MEF2 CHIMERA |
6bz1_C | 2e-20 | 4 | 70 | 1 | 67 | MEF2 CHIMERA |
6bz1_D | 2e-20 | 4 | 70 | 1 | 67 | MEF2 CHIMERA |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24207 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC137823 | 5e-85 | AC137823.45 Medicago truncatula clone mth2-14c17, complete sequence. | |||
GenBank | AC146650 | 5e-85 | AC146650.13 Medicago truncatula clone mth2-14j5, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021745295.1 | 2e-36 | agamous-like MADS-box protein AGL9 homolog isoform X1 | ||||
Refseq | XP_022850778.1 | 8e-38 | MADS-box protein EJ2-like | ||||
Refseq | XP_028059218.1 | 1e-36 | MADS-box protein EJ2-like | ||||
Swissprot | Q8LLR2 | 1e-36 | MADS2_VITVI; Agamous-like MADS-box protein MADS2 | ||||
TrEMBL | A0A151RCR0 | 8e-38 | A0A151RCR0_CAJCA; Agamous-like MADS-box protein AGL9 isogeny | ||||
STRING | Aquca_002_00913.1 | 3e-36 | (Aquilegia coerulea) | ||||
STRING | cassava4.1_033922m | 2e-36 | (Manihot esculenta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF119 | 33 | 360 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G24260.3 | 4e-38 | MIKC_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24207 |
Publications ? help Back to Top | |||
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