PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA24173 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 159aa MW: 18407.2 Da PI: 10.3049 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 37.8 | 6.5e-12 | 7 | 53 | 40 | 91 |
FAR1 40 kreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 k k++++++++r+ ++gC+a+l++k++ +gkw v+++ ++HnHel+p Tp57577_TGAC_v2_mRNA24173 7 K-----KRESTAQNPRPCLKVGCEASLRIKRNCEGKWIVHNFIKNHNHELFP 53 3.....333566799***********************************86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 1.8E-9 | 8 | 53 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 159 aa Download sequence Send to blast |
LHTRYGKKRE STAQNPRPCL KVGCEASLRI KRNCEGKWIV HNFIKNHNHE LFPAYAHYFP 60 CHRGIKRNCT LFYRGINKVQ KHTIETLQHV GVRRTKIYAS MAKQYGGYEN IGCLEKDIGN 120 GNHLDKSRRL ELEKKIQEEN VGVFYAHASR KSKILLCN* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA24173 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024636633.1 | 1e-64 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
Refseq | XP_024642307.1 | 2e-65 | protein FAR-RED IMPAIRED RESPONSE 1-like | ||||
TrEMBL | A0A2K3NBU0 | 4e-59 | A0A2K3NBU0_TRIPR; Protein far-red impaired response 1-like (Fragment) | ||||
STRING | AES71367 | 1e-61 | (Medicago truncatula) | ||||
STRING | AES76124 | 1e-61 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF27905 | 2 | 3 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G15090.1 | 1e-25 | FAR1 family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA24173 |