PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23958 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | MYB_related | ||||||||
Protein Properties | Length: 258aa MW: 29988.6 Da PI: 10.3179 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 32.1 | 2.7e-10 | 4 | 39 | 11 | 47 |
HHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 11 llvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 l++++ +++G g+Wk+I++++ ++t q+ s+ qky Tp57577_TGAC_v2_mRNA23958 4 LFLQGLEKYGRGNWKKISKHVV-TKTHTQVASHAQKY 39 89********************.*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.101 | 1 | 44 | IPR017930 | Myb domain |
CDD | cd00167 | 9.86E-7 | 3 | 40 | No hit | No description |
TIGRFAMs | TIGR01557 | 2.3E-12 | 3 | 43 | IPR006447 | Myb domain, plants |
SuperFamily | SSF46689 | 1.64E-11 | 3 | 45 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-8 | 4 | 39 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.9E-6 | 4 | 38 | IPR009057 | Homeodomain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 258 aa Download sequence Send to blast |
MCRLFLQGLE KYGRGNWKKI SKHVVTKTHT QVASHAQKYF LRQDDAMKKR KRTSIHDITE 60 WNENVQPLVY KDYNSTPPPP PNVEMHQIHD TTELNGNFHP LLYKDYNSTP TPNVEMHQIH 120 DIIEWNGNSH SSPPPSSLHA ASALPLHFRR NLRRPQRKSH SRYLLTGGHG RTHITGCLTQ 180 RIPXXXXXXX XXXADTLKLC SQLSTEMKTR LPPSISTPPE RWGPWLMQKV EWWGVGNVYL 240 DREEQWSLSS QRMMRKS* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 47 | 52 | KKRKRT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23958 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF20559 | 2 | 5 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G04760.1 | 6e-20 | MYB family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23958 |