PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23927 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | FAR1 | ||||||||
Protein Properties | Length: 232aa MW: 26790.9 Da PI: 9.7559 | ||||||||
Description | FAR1 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | FAR1 | 73.5 | 4.5e-23 | 44 | 133 | 2 | 90 |
FAR1 2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtklel 83 fY +YAk GF vrk+ ++ +g i++r+f C++eg+r++++ + +++r +r++tr++C+a+l+++ ++ + +w+vt++e Tp57577_TGAC_v2_mRNA23927 44 FYVKYAKCNGFVVRKDVVVRN-VSGMIITRRFLCNREGERDQKHLTrVDRKRDHRVVTRINCEAHLRIHYNEeRLRWVVTSFEV 126 9***************99998.8899***************9998856788889*****************9999********* PP FAR1 84 eHnHela 90 HnHel Tp57577_TGAC_v2_mRNA23927 127 SHNHELI 133 *****96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03101 | 5.2E-21 | 44 | 133 | IPR004330 | FAR1 DNA binding domain |
Sequence ? help Back to Top |
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Protein Sequence Length: 232 aa Download sequence Send to blast |
MYLMIALRNS DSVVIGGRFV RINIMTVDDI EGLDFRREKD AYGFYVKYAK CNGFVVRKDV 60 VVRNVSGMII TRRFLCNREG ERDQKHLTRV DRKRDHRVVT RINCEAHLRI HYNEERLRWV 120 VTSFEVSHNH ELISSTHIHL FLAYRGMTDA DKAQIDSLHS TGMQTCHRMG HMVANKGGYE 180 AVGFIKKYLY NYFGKKTIVD IKDSDVVASL SYLCGKAGLD HMLYAKYTIG R* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23927 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_029126074.1 | 6e-87 | protein FAR1-RELATED SEQUENCE 5-like | ||||
TrEMBL | A0A2K3NMH6 | 1e-109 | A0A2K3NMH6_TRIPR; Heme-binding protein 2-like |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF3290 | 7 | 52 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G38180.1 | 3e-22 | FAR1-related sequence 5 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23927 |