PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23873 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | WRKY | ||||||||
Protein Properties | Length: 315aa MW: 35140.5 Da PI: 8.5478 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 93.9 | 1.2e-29 | 161 | 220 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 ++Dgy+WrKYGqK+ +++++pr+Y++C++a +Cpvkkkv+rs +d+++++ tYegeHnh+ Tp57577_TGAC_v2_mRNA23873 161 VKDGYHWRKYGQKVTRDNPCPRAYFKCSFApSCPVKKKVQRSVDDQSMLVATYEGEHNHP 220 58***************************99****************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.1E-29 | 151 | 222 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 7.72E-26 | 159 | 222 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 26.498 | 160 | 222 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.7E-34 | 161 | 221 | IPR003657 | WRKY domain |
Pfam | PF03106 | 1.6E-24 | 162 | 220 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0002237 | Biological Process | response to molecule of bacterial origin | ||||
GO:0002238 | Biological Process | response to molecule of fungal origin | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0009414 | Biological Process | response to water deprivation | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009623 | Biological Process | response to parasitic fungus | ||||
GO:0009651 | Biological Process | response to salt stress | ||||
GO:0009685 | Biological Process | gibberellin metabolic process | ||||
GO:0009723 | Biological Process | response to ethylene | ||||
GO:0009737 | Biological Process | response to abscisic acid | ||||
GO:0009751 | Biological Process | response to salicylic acid | ||||
GO:0009753 | Biological Process | response to jasmonic acid | ||||
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0050691 | Biological Process | regulation of defense response to virus by host | ||||
GO:0050832 | Biological Process | defense response to fungus | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:1990841 | Molecular Function | promoter-specific chromatin binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 315 aa Download sequence Send to blast |
MDCSSYINTS LDLNIIPYRN HEEVQKKEVE SNFFSLGMTK FSVKDESIDE LEEELKRVTA 60 ENKKLVEMLS VVCENYNTLR SHLMEYMKRN PEKELSASSK KRKSESSNNN NSNLIGINNG 120 NSESSSTDEE LCKKPREEEN LKAKISRAYV RTEASDTGLI VKDGYHWRKY GQKVTRDNPC 180 PRAYFKCSFA PSCPVKKKVQ RSVDDQSMLV ATYEGEHNHP QPPQMESTSG SARSVSLNSV 240 PTSASLSSSA PKVVTLDLTN SKSSTKDSKI IEPKKESPKV TKNLVEQMAT SLTTDPNFRA 300 ALVAAISGRL VHNN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 7e-21 | 160 | 223 | 13 | 75 | WRKY transcription factor 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor (By similarity). Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250|UniProtKB:Q9SUP6}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00251 | DAP | Transfer from AT1G80840 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23873 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JN008710 | 0.0 | JN008710.1 Medicago sativa WRKY transcription factor 56 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_003604245.1 | 0.0 | probable WRKY transcription factor 40 | ||||
Swissprot | Q9SAH7 | 2e-95 | WRK40_ARATH; Probable WRKY transcription factor 40 | ||||
TrEMBL | A0A2K3NHZ4 | 0.0 | A0A2K3NHZ4_TRIPR; WRKY transcription factor | ||||
STRING | AES86442 | 0.0 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF973 | 34 | 115 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G80840.1 | 9e-86 | WRKY DNA-binding protein 40 |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23873 |