PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Tp57577_TGAC_v2_mRNA23716 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
|
||||||||
Family | bHLH | ||||||||
Protein Properties | Length: 241aa MW: 26771.2 Da PI: 8.896 | ||||||||
Description | bHLH family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HLH | 41.6 | 2.2e-13 | 37 | 84 | 2 | 54 |
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 +++h e+ErrRR+riN ++ Lr+llP+ +K +Ka+ L ++v+++k L Tp57577_TGAC_v2_mRNA23716 37 CKSHREAERRRRQRINAHLSSLRSLLPNT-----TKSDKASLLAEVVHHVKRL 84 789*************************9.....8****************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50888 | 15.586 | 35 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Pfam | PF00010 | 7.8E-11 | 37 | 84 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF47459 | 1.03E-13 | 38 | 97 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
Gene3D | G3DSA:4.10.280.10 | 2.2E-13 | 39 | 98 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SMART | SM00353 | 1.4E-11 | 41 | 90 | IPR011598 | Myc-type, basic helix-loop-helix (bHLH) domain |
SuperFamily | SSF55021 | 9.61E-5 | 140 | 216 | No hit | No description |
Gene3D | G3DSA:3.30.70.260 | 7.5E-6 | 141 | 212 | No hit | No description |
CDD | cd04873 | 2.01E-4 | 144 | 215 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 241 aa Download sequence Send to blast |
MLPPLRRFYG FESWLDKDSE KINGEKSKSE RKSREACKSH REAERRRRQR INAHLSSLRS 60 LLPNTTKSDK ASLLAEVVHH VKRLRKEADD VANRNDESSS SCSGEPGSVD STEVGETWPF 120 PGESDEATVS YCGGEEGEPK RMKVTVCCED RPGLNRDLTK AIRSVRAIPI RAEMMTVGGR 180 TKSVMVVECC KGKGGGDGRE EKEVEALERG LKAVIENRAF VDSRMGPFML GLKRARESNS 240 * |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23716 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_003615282.1 | 1e-119 | transcription factor bHLH30 | ||||
TrEMBL | A0A2K3M0L9 | 1e-172 | A0A2K3M0L9_TRIPR; Transcription factor bHLH30-like protein | ||||
STRING | AES98240 | 1e-118 | (Medicago truncatula) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF11441 | 28 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G68810.1 | 1e-28 | bHLH family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Tp57577_TGAC_v2_mRNA23716 |