PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23501
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 340aa    MW: 38287.9 Da    PI: 4.9918
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23501genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH36.68.2e-12155201455
                                HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                        HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                                 h ++Er+RR++i + f  L  l+P +     kK++Ka++L  A+ ++k+Lq
  Tp57577_TGAC_v2_mRNA23501 155 DHIIAERKRREKISQQFIALSALIPDL-----KKMDKASVLADAITHVKQLQ 201
                                5999***********************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.627151200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.7E-17155217IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-9156201IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.84E-11156205No hitNo description
SuperFamilySSF474592.22E-16156218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.9E-13157206IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 340 aa     Download sequence    Send to blast
STDESWTTWL CDLEPEDYNF MDDINITPLP EEPENLQQTL SSGSHCSQTT SSTMSNSSGD  60
VVNSFEERPT KILKTTPSNT GYPTQKKDPS HSYFLCFNNE NPETEPNPIL NIDSSLKPKA  120
QILNYDGKSE NKKKEPKRNI QESKKTDSVT RNAKDHIIAE RKRREKISQQ FIALSALIPD  180
LKKMDKASVL ADAITHVKQL QEQVKVLEEK NQRINKESVV YVEKTKSCSS DEDVSDNTSS  240
NSEYGNCCHP SRSLPEVEAR VSEKNVLIRI HCEKQKGVLM NIIQEIENLH LSVTSSSTLQ  300
FGTTKLDITI IAEMDEEFSL SVQELARNLQ VGLLQFMSL*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1159164ERKRRE
2160165RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23501
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCR9329631e-79CR932963.2 Medicago truncatula chromosome 5 clone mth2-115p22, COMPLETE SEQUENCE.
GenBankCR9550041e-79CR955004.2 Medicago truncatula chromosome 5 clone mte1-9e19, COMPLETE SEQUENCE.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003611499.11e-171transcription factor bHLH18
TrEMBLA0A2K3LDI70.0A0A2K3LDI7_TRIPR; Transcription factor bHLH25-like protein (Fragment)
STRINGAES944571e-171(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.12e-54bHLH family protein