PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23457

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

G2-like

Protein Properties

Length: 300aa MW: 33380.6 Da PI: 6.7891

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23457	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	96.7	1.7e-30	109	162	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 +prl+Wtp+LH+rFv+av++L G+++A+Pkti++lm+v+gLt+e+v+SHLQkYRl Tp57577_TGAC_v2_mRNA23457 109 RPRLVWTPQLHKRFVDAVAHL-GIKNAVPKTIMQLMSVDGLTRENVASHLQKYRL 162 59*****************.******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.78E-20	106	166	IPR009057	Homeodomain-like
PROSITE profile	PS51294	11.059	106	165	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-30	108	167	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.1E-24	110	162	IPR006447	Myb domain, plants
Pfam	PF00249	1.1E-7	112	161	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 300 aa Download sequence Send to blast
MREDDSNWFS RWEEQLPSPE ELMPLSQTLI TPDLAIAFDI RNNINNNNNN PLNNINHSNP 60 QQQQQHHQNH QNQQQQPQPS SLPSSTDFAD SGELGSGTAG EEPARTLKRP RLVWTPQLHK 120 RFVDAVAHLG IKNAVPKTIM QLMSVDGLTR ENVASHLQKY RLYLKRMQGI SSGGGGGSGG 180 GSGGGNDPAT DXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXGC CCCCCSQQHQ 240 QQHQNQHQNQ HQNQHQQQQL HRIGTQIHHS PVGGYVEDME SANASGGRKV LTLFPTGDD*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5lxu_A	8e-33	109	165	1	57	Transcription factor LUX
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	171	181	SGGGGGSGGGS

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that acts as a negative regulator of freezing tolerance via a CBF-independent pathway. {ECO:0000269\|PubMed:20331973}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23457

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Induced by drought, salt and abscisic acid (ABA). Down-regulated by cold. {ECO:0000269\|PubMed:20331973}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	EF692142	4e-42	EF692142.1 Trifolium repens clone CloverSSR-62_H04_009_1 microsatellite sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_007162050.1	2e-94	hypothetical protein PHAVU_001G119500g
Swissprot	O22210	1e-56	MYBC1_ARATH; Transcription factor MYBC1
TrEMBL	V7CV76	4e-93	V7CV76_PHAVU; Uncharacterized protein
STRING	XP_007162050.1	7e-94	(Phaseolus vulgaris)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF8542	30	45

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10760.1	2e-58	G2-like family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23457

Publications ? help Back to Top
Sardesai N,Laluk K,Mengiste T,Gelvin S The Arabidopsis Myb transcription factor MTF1 is a unidirectional regulator of susceptibility to Agrobacterium. Plant Signal Behav, 2018. [PMID:24785741]