PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23430
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family WRKY
Protein Properties Length: 424aa    MW: 47207 Da    PI: 8.0926
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23430genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY92.14.3e-29208266259
                                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                                 Dg++WrKYGqK+ kg+++pr+YYrC++  +Cpv+k+v+r+ +d++v+++tYeg+Hnh+
  Tp57577_TGAC_v2_mRNA23430 208 MDGCQWRKYGQKTAKGNPCPRAYYRCSMGtSCPVRKQVQRCFKDESVFITTYEGNHNHQ 266
                                6***************************98****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.9E-31192268IPR003657WRKY domain
SuperFamilySSF1182901.7E-26201268IPR003657WRKY domain
PROSITE profilePS5081128.449202268IPR003657WRKY domain
SMARTSM007741.3E-33207267IPR003657WRKY domain
PfamPF031061.3E-25209266IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 424 aa     Download sequence    Send to blast
MEDKGSTKKF MEDDEKPSYD DNNIDSQIKK TDGPSSSHNN TQGSTLLLSL SLNNTTQLPH  60
QIQAKPQIQI GKLRVKLEEE KKENENLKAM LNVVNERCIV LQNRLLVAMH MHQISSSPQN  120
NNNLPKGNGQ DAEKSMLPTR QFFDEPSSSD CSKKEGFQNN ENSMGRNFAC ENINEGEINK  180
KIEDESSEVS CRRARVSIRA RSDFSLMMDG CQWRKYGQKT AKGNPCPRAY YRCSMGTSCP  240
VRKQVQRCFK DESVFITTYE GNHNHQLPQA AKPIANLISS ALNTFFTNSS TSLQYGNNLS  300
NTFLFSSPLS PPNSNAIATF SPSPTCPIIT LDFTLPPSNF LQFKNHKQSS SLFPFPLQGY  360
PQSFEGFPNM INNERKLVLV DVVSEAIAKD PSLKATLFAA MSSFTNGSDP LNINNLSQPS  420
KSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A4e-21194268174WRKY transcription factor 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23430
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003595431.20.0probable WRKY transcription factor 47
TrEMBLG7IQG10.0G7IQG1_MEDTR; Putative transcription factor WRKY family
STRINGAES656820.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF139451122
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G04450.15e-48WRKY family protein