PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23338
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family GRAS
Protein Properties Length: 461aa    MW: 52194.4 Da    PI: 6.7019
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23338genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS447.59e-137444571374
                       GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklf 84 
                                l++lLl+cA+ v++ +le+a+a+L+++s laspdgd+mqR+aayfteALa r+++ +++l kal++++     +see+ ++klf
  Tp57577_TGAC_v2_mRNA23338  44 LIHLLLTCANQVADCNLENANATLEQISMLASPDGDTMQRIAAYFTEALADRILKAWPGLHKALNSTRMV--MVSEEILVQKLF 125
                                689*************************************************************998886..69********** PP

                       GRAS  85 sevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakf 168
                                +e++P+lk++++++NqaI+ea+ege+++HiiD+++ +++QW+aLlq L++Rpegpp+lRiT v++    +ke l ++++rL + 
  Tp57577_TGAC_v2_mRNA23338 126 FELFPFLKVAYILTNQAIVEAMEGEKMIHIIDLNAAEPAQWIALLQVLSTRPEGPPHLRITSVHP----KKEVLDQIARRLIEE 205
                                *****************************************************************....9************** PP

                       GRAS 169 AeelgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrll...................................... 214
                                Ae+l++pf+fn+ v+++le+le+e+L+vk+gEala++++lqlh+ll                                      
  Tp57577_TGAC_v2_mRNA23338 206 AEKLDIPFQFNP-VVSKLENLEFEKLHVKTGEALAISSILQLHTLLalddetmkrkspllskpsngthlqrfhpmnqtslgdlf 288
                                ************.799******************************************************************** PP

                       GRAS 215 .........desvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErel 289
                                          +s + + +++++L+++++lsPkv+vv+eq+++hn++++++r+leal+ y+alfd+le+++pr+s er  vE++l
  Tp57577_TGAC_v2_mRNA23338 289 ekdtrslesTSSSPASITIESFLNALWRLSPKVMVVTEQDSNHNGSTLMDRLLEALYSYAALFDCLESTVPRTSLERLRVEKML 372
                                ******98744444444679**************************************************************** PP

                       GRAS 290 lgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                                +g+ei+n++aceg er+erhe+l kW +rl+   F+ vpls++   qa++ l+ ++  gy+++ee+g++v++W+dr+L+s+SaW
  Tp57577_TGAC_v2_mRNA23338 373 FGEEIKNIIACEGLERKERHEKLDKWFMRLDFTRFGHVPLSYFGRLQARRFLQSCGCGGYKMKEENGCVVIYWQDRSLFSISAW 456
                                ************************************************************************************ PP

                       GRAS 374 r 374
                                r
  Tp57577_TGAC_v2_mRNA23338 457 R 457
                                8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098557.12618437IPR005202Transcription factor GRAS
PfamPF035143.1E-13444457IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MLQEGSCSVS SPLKLFSMMS ASPSLGSSHS WLKELKSEER GLYLIHLLLT CANQVADCNL  60
ENANATLEQI SMLASPDGDT MQRIAAYFTE ALADRILKAW PGLHKALNST RMVMVSEEIL  120
VQKLFFELFP FLKVAYILTN QAIVEAMEGE KMIHIIDLNA AEPAQWIALL QVLSTRPEGP  180
PHLRITSVHP KKEVLDQIAR RLIEEAEKLD IPFQFNPVVS KLENLEFEKL HVKTGEALAI  240
SSILQLHTLL ALDDETMKRK SPLLSKPSNG THLQRFHPMN QTSLGDLFEK DTRSLESTSS  300
SPASITIESF LNALWRLSPK VMVVTEQDSN HNGSTLMDRL LEALYSYAAL FDCLESTVPR  360
TSLERLRVEK MLFGEEIKNI IACEGLERKE RHEKLDKWFM RLDFTRFGHV PLSYFGRLQA  420
RRFLQSCGCG GYKMKEENGC VVIYWQDRSL FSISAWRAMK *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-66324567378Protein SCARECROW
5b3h_A2e-66324566377Protein SCARECROW
5b3h_D2e-66324566377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23338
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1533510.0AC153351.24 Medicago truncatula clone mth2-103a3, complete sequence.
GenBankAC2025720.0AC202572.7 Medicago truncatula clone mth2-161l14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003607301.10.0scarecrow-like protein 3
SwissprotQ9LPR80.0SCL3_ARATH; Scarecrow-like protein 3
TrEMBLA0A2K3PHQ10.0A0A2K3PHQ1_TRIPR; SCARECROW-like protein 3-like
STRINGAES894980.0(Medicago truncatula)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF23833484
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50420.10.0scarecrow-like 3
Publications ? help Back to Top
  1. Gong X, et al.
    SEUSS Integrates Gibberellin Signaling with Transcriptional Inputs from the SHR-SCR-SCL3 Module to Regulate Middle Cortex Formation in the Arabidopsis Root.
    Plant Physiol., 2016. 170(3): p. 1675-83
    [PMID:26818732]
  2. Lee SA, et al.
    Interplay between ABA and GA Modulates the Timing of Asymmetric Cell Divisions in the Arabidopsis Root Ground Tissue.
    Mol Plant, 2016. 9(6): p. 870-84
    [PMID:26970019]
  3. Choi JW,Lim J
    Control of Asymmetric Cell Divisions during Root Ground Tissue Maturation.
    Mol. Cells, 2016. 39(7): p. 524-9
    [PMID:27306644]