PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23311

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

SBP

Protein Properties

Length: 184aa MW: 20763.1 Da PI: 9.4217

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23311	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	136.9	6.2e-43	67	143	2	78
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 Cq+e+C adl++ak+yhrrhkvCe+hskapvv+vsgl+qrfCqqCsrfh+l efDe+krsCrrrLa+hnerrrk+++ Tp57577_TGAC_v2_mRNA23311 67 CQAERCGADLTDAKRYHRRHKVCEFHSKAPVVVVSGLRQRFCQQCSRFHDLAEFDESKRSCRRRLAGHNERRRKTNP 143 **************************************************************************976 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	5.1E-36	59	128	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	32.83	64	141	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	2.16E-40	65	145	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	4.4E-32	67	140	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010321	Biological Process	regulation of vegetative phase change
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 184 aa Download sequence Send to blast
MEARSIERKR TLMMEKVRRN NTVEEEVENE VEEEDGDFSL TEEEKKKGAG GGRRGGSGGG 60 GVSPPSCQAE RCGADLTDAK RYHRRHKVCE FHSKAPVVVV SGLRQRFCQQ CSRFHDLAEF 120 DESKRSCRRR LAGHNERRRK TNPETANEGS SHSKGQQHQP KETQCRIQMN LPGSSGYKSF 180 NIR*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	4e-38	55	140	1	84	squamosa promoter binding protein-like 4
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23311

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013445497.1	4e-97	squamosa promoter-binding protein 1
Swissprot	Q38740	3e-43	SBP2_ANTMA; Squamosa promoter-binding protein 2
TrEMBL	A0A2K3P130	1e-131	A0A2K3P130_TRIPR; Squamosa promoter-binding protein 1-like
STRING	XP_004510032.1	5e-88	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF535	34	153

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G53160.2	1e-42	squamosa promoter binding protein-like 4

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23311

Publications ? help Back to Top
Klein J,Saedler H,Huijser P A new family of DNA binding proteins includes putative transcriptional regulators of the Antirrhinum majus floral meristem identity gene SQUAMOSA. Mol. Gen. Genet., 1996. 250(1): p. 7-16 [PMID:8569690]