PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Tp57577_TGAC_v2_mRNA23303 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
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Family | TCP | ||||||||
Protein Properties | Length: 520aa MW: 57705 Da PI: 6.2813 | ||||||||
Description | TCP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | TCP | 120.8 | 1.6e-37 | 168 | 288 | 2 | 127 |
TCP 2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssa 82 +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i+el+++++ +++++ +++++++++ Tp57577_TGAC_v2_mRNA23303 168 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDELAQLPAWNPTATcstTPQQQQQQQ 251 79**************************************************************55555333243222222222 PP TCP 83 snsssg..................kaaksaakskksqksaasalnlakesrakarararertr 127 + ++ + s a r +++ Tp57577_TGAC_v2_mRNA23303 252 Q-TNEMfnrqspvdnhqvtastihR------------------------SAAALERRMP-QQQ 288 2.11112333333333333333320........................2222222211.222 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03634 | 2.2E-33 | 168 | 291 | IPR005333 | Transcription factor, TCP |
PROSITE profile | PS51369 | 33.768 | 170 | 228 | IPR017887 | Transcription factor TCP subgroup |
Sequence ? help Back to Top |
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Protein Sequence Length: 520 aa Download sequence Send to blast |
LEEDKHNKGL SLDPPRTSHQ GPHHHNNNNN NNDDDDEEEE DDEHNSSPSS GNPHPHYHQQ 60 NSTFHFHRYP YFQQHLDLEP EQEPLQQPKK WSSFLPPPHP NQPPTTSSSS SSFYSIEYAR 120 KMGETTHDHQ TGEAETTAAT TTKPTATSSK RIAGEIVEVQ GGHIVRSTGR KDRHSKVCTA 180 KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKSSIDELAQ LPAWNPTATC 240 STTPQQQQQQ QQTNEMFNRQ SPVDNHQVTA STIHRSAAAL ERRMPQQQQE QFPSQQLELD 300 YSNSSSGKHG FLQGSLDTDI ADTIKSFFPV ETPTTSFHSY PQPPDLLSRT AATAQQQDLR 360 LSLQSFQDPI LLQSHHHHNQ VLFAGNSSLG GYDVGGSGST LWSEQQQQEE NDNGRFHRMM 420 AWNANNANVN DPDGGNSGHG GGFVFSTPAA XXXXXXXXXX XXXXLAVMAS FLLRGDPFSP 480 ASVSGGGFSG FRIPARIQGE EEHDGLSDKP SSASSDSRH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5zkt_A | 3e-20 | 175 | 228 | 1 | 54 | Putative transcription factor PCF6 |
5zkt_B | 3e-20 | 175 | 228 | 1 | 54 | Putative transcription factor PCF6 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00009 | PBM | Transfer from 929286 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Tp57577_TGAC_v2_mRNA23303 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013445507.1 | 1e-175 | transcription factor TCP4 | ||||
TrEMBL | A0A2K3N9B3 | 0.0 | A0A2K3N9B3_TRIPR; Transcription factor TCP4-like protein | ||||
STRING | XP_004510040.1 | 1e-145 | (Cicer arietinum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Fabids | OGEF1163 | 34 | 105 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G15030.3 | 4e-66 | TCP family protein |
Link Out ? help Back to Top | |
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Phytozome | Tp57577_TGAC_v2_mRNA23303 |