PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23303
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family TCP
Protein Properties Length: 520aa    MW: 57705 Da    PI: 6.2813
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23303genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP120.81.6e-371682882127
                        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec...eaesssssa 82 
                                +g+kdrhsk++T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak +i+el+++++ +++++   +++++++++
  Tp57577_TGAC_v2_mRNA23303 168 TGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSSIDELAQLPAWNPTATcstTPQQQQQQQ 251
                                79**************************************************************55555333243222222222 PP

                        TCP  83 snsssg..................kaaksaakskksqksaasalnlakesrakarararertr 127
                                +  ++                   +                        s a    r   +++
  Tp57577_TGAC_v2_mRNA23303 252 Q-TNEMfnrqspvdnhqvtastihR------------------------SAAALERRMP-QQQ 288
                                2.11112333333333333333320........................2222222211.222 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036342.2E-33168291IPR005333Transcription factor, TCP
PROSITE profilePS5136933.768170228IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
LEEDKHNKGL SLDPPRTSHQ GPHHHNNNNN NNDDDDEEEE DDEHNSSPSS GNPHPHYHQQ  60
NSTFHFHRYP YFQQHLDLEP EQEPLQQPKK WSSFLPPPHP NQPPTTSSSS SSFYSIEYAR  120
KMGETTHDHQ TGEAETTAAT TTKPTATSSK RIAGEIVEVQ GGHIVRSTGR KDRHSKVCTA  180
KGPRDRRVRL SAHTAIQFYD VQDRLGYDRP SKAVDWLIKK AKSSIDELAQ LPAWNPTATC  240
STTPQQQQQQ QQTNEMFNRQ SPVDNHQVTA STIHRSAAAL ERRMPQQQQE QFPSQQLELD  300
YSNSSSGKHG FLQGSLDTDI ADTIKSFFPV ETPTTSFHSY PQPPDLLSRT AATAQQQDLR  360
LSLQSFQDPI LLQSHHHHNQ VLFAGNSSLG GYDVGGSGST LWSEQQQQEE NDNGRFHRMM  420
AWNANNANVN DPDGGNSGHG GGFVFSTPAA XXXXXXXXXX XXXXLAVMAS FLLRGDPFSP  480
ASVSGGGFSG FRIPARIQGE EEHDGLSDKP SSASSDSRH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A3e-20175228154Putative transcription factor PCF6
5zkt_B3e-20175228154Putative transcription factor PCF6
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00009PBMTransfer from 929286Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23303
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013445507.11e-175transcription factor TCP4
TrEMBLA0A2K3N9B30.0A0A2K3N9B3_TRIPR; Transcription factor TCP4-like protein
STRINGXP_004510040.11e-145(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF116334105
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G15030.34e-66TCP family protein