PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23302

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

FAR1

Protein Properties

Length: 429aa MW: 50233.5 Da PI: 9.162

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23302	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26.9	1.6e-08	4	59	19	73
FAR1 19 skkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekd 73 +ks+++g ++ ++ Cskeg r++++ k ++ + + etr+gCka+l +kk+++ Tp57577_TGAC_v2_mRNA23302 4 VTKSRTDGVVIGQQILCSKEGLRSKKNLKkENGSLIVHDETRVGCKAMLYIKKKEE 59 578999***************9998772334445899***********9964 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.5E-6	4	59	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	3.6E-25	70	146	IPR018289	MULE transposase domain
PROSITE profile	PS50966	9.99	333	369	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	8.9E-6	341	366	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	1.4E-5	344	371	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 429 aa Download sequence Send to blast
MGRVTKSRTD GVVIGQQILC SKEGLRSKKN LKKENGSLIV HDETRVGCKA MLYIKKKEER 60 IVXXXXXXXX FTGVNHHQQS ILFGCALLWD ETEESFVWLL STWLEAMDGV SPKIIITDQD 120 AAISNAVAKV FPHVNHHYCM WHIEKKVPQY LNHIYHEHSE FKNQFYKCIH QSTTIEDFES 180 DWEAMIDKYE LQDNQWLKKI YSIRAKWIPS YVRHNFCAGM STTQRSESMN KFFKDFLNSS 240 TQLNKFVKQY DKALDARYNK EREKNVKTRN SKPQLRTLYP MEEDASKIYT RKVFRKFQDE 300 LVGSQVFIAE KVESSVEVSK YKIHEIFKEK PNYYVTFYVI SKEAKCNCHM FEFVGILCRH 360 VLNVFIKENV YSLPSQYVLH RWTINAKKEN FKGTAIEDLQ EGSNKTSSTS LFNSIMVESL 420 QVSERGSR*

Sequence ? help Back to Top

Protein Sequence Length: 429 aa Download sequence Send to blast

MGRVTKSRTD GVVIGQQILC SKEGLRSKKN LKKENGSLIV HDETRVGCKA MLYIKKKEER  60
IVXXXXXXXX FTGVNHHQQS ILFGCALLWD ETEESFVWLL STWLEAMDGV SPKIIITDQD  120
AAISNAVAKV FPHVNHHYCM WHIEKKVPQY LNHIYHEHSE FKNQFYKCIH QSTTIEDFES  180
DWEAMIDKYE LQDNQWLKKI YSIRAKWIPS YVRHNFCAGM STTQRSESMN KFFKDFLNSS  240
TQLNKFVKQY DKALDARYNK EREKNVKTRN SKPQLRTLYP MEEDASKIYT RKVFRKFQDE  300
LVGSQVFIAE KVESSVEVSK YKIHEIFKEK PNYYVTFYVI SKEAKCNCHM FEFVGILCRH  360
VLNVFIKENV YSLPSQYVLH RWTINAKKEN FKGTAIEDLQ EGSNKTSSTS LFNSIMVESL  420
QVSERGSR*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23302

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC136139	0.0	AC136139.24 Medicago truncatula clone mth2-22c2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024642198.1	0.0	protein FAR1-RELATED SEQUENCE 5-like isoform X1
TrEMBL	A0A396JW00	0.0	A0A396JW00_MEDTR; Putative transcription factor FAR family
STRING	AES62414	0.0	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF40	30	530

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	1e-109	FAR1-related sequence 5

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23302