PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23203
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family Trihelix
Protein Properties Length: 397aa    MW: 45373.1 Da    PI: 6.4546
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23203genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix85.56.3e-2784167286
                   trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdql 85 
                                W ++e++ Li +rrem++ ++++k++k+lWe++s+kmre+gf rsp++C++kw+nl k++kk k+++ ++ s+s  +++ ++++
  Tp57577_TGAC_v2_mRNA23203  84 WVQDETRSLIGLRREMDSLFNTSKSNKHLWEQISAKMREKGFDRSPTMCTDKWRNLLKEFKKAKHHQDRGGSGSG-KMSCYKEI 166
                                ********************************************************************9966555.89999988 PP

                   trihelix  86 e 86 
                                +
  Tp57577_TGAC_v2_mRNA23203 167 D 167
                                7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.45576140IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.605.4E-477142IPR009057Homeodomain-like
SMARTSM007170.001580142IPR001005SANT/Myb domain
CDDcd122031.25E-2882147No hitNo description
PfamPF138373.4E-2083169No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MYLSSEKPRP IDFYKEEARD MMMEVVTNAD LPPPPHPPPP QPQQQHHHHQ LQQAPPPQMI  60
LTAESSGEDP EMEIKAPKKR AETWVQDETR SLIGLRREMD SLFNTSKSNK HLWEQISAKM  120
REKGFDRSPT MCTDKWRNLL KEFKKAKHHQ DRGGSGSGKM SCYKEIDEIL RERSKCAQYK  180
SLTPSSKVES SYMHFADKGI DDANISFGPV EASGRPTLNL ERSLDHDGHP LAIAAAEVAA  240
SGVPPWNWRE TPGNGGETQS CCGRVISVKW GDYTRRIGID GTPEAIKEAI RAAFRLRTKR  300
AFWLEDEEQI IRSIDRDMPI GNYTLHLDEG MAIKVCLYDE SDRIPVHTEE KIFYTEDDYR  360
EFLARRAWTC LRDLDGYRNI DNMDDLRPGA IYRGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2jmw_A1e-4578165186DNA binding protein GT-1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that binds specifically to the core DNA sequence 5'-GGTTAA-3'. May act as a molecular switch in response to light signals. {ECO:0000269|PubMed:10437822, ECO:0000269|PubMed:15044016, ECO:0000269|PubMed:7866025}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00141DAPTransfer from AT1G13450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23203
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT1367840.0BT136784.1 Medicago truncatula clone JCVI-FLMt-18L18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004502331.10.0trihelix transcription factor GT-4
SwissprotQ9FX530.0TGT1_ARATH; Trihelix transcription factor GT-1
TrEMBLA0A1S2YCH90.0A0A1S2YCH9_CICAR; trihelix transcription factor GT-4
STRINGXP_004502331.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF68173248
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13450.11e-178Trihelix family protein
Publications ? help Back to Top
  1. Le Gourrierec J,Li YF,Zhou DX
    Transcriptional activation by Arabidopsis GT-1 may be through interaction with TFIIA-TBP-TATA complex.
    Plant J., 1999. 18(6): p. 663-8
    [PMID:10417717]