PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23195
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 355aa    MW: 40162.1 Da    PI: 4.8552
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23195genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH35.51.8e-11192236554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                h ++Er+RR+++ ++f  L  l+P++     kK++Ka++L+  ++Y+k+L
  Tp57577_TGAC_v2_mRNA23195 192 HIIAERKRREKLSQSFIALAALVPNL-----KKMDKASVLTDSIKYMKEL 236
                                899***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.939187236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.59E-16191252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000103.4E-9192236IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.4E-16192252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.12E-12192241No hitNo description
SMARTSM003531.1E-12193242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MEEINNTPMN SSETSKWLSD LEMDEYNLFS EECNLNFLDA GEEEFLSHDI ATVFQEQQNQ  60
QQPLTSESTD ETNFESFNFY FEIERPIKHM KTTNDSDKIT ETLSPKLSPS SFQSLILSFE  120
NPPNSPPTIN TPQIYGFDPT LNSKQNETES LSPPQLGNIH GSSQIPKGSS KNENLETKTS  180
QNKRSRNHGH DHIIAERKRR EKLSQSFIAL AALVPNLKKM DKASVLTDSI KYMKELKQRL  240
EVLEEQNKKK KAESVVVINK QDLCISDDNS SCDESIEGAD IDANESVLQV DARVSGKEML  300
IRIHCKKHKG LLVKIMVEIQ RFELFVVNSS VLPFGNSILN ITIIAQVKDS FYLP*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1195200ERKRRE
2196201RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23195
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013442259.11e-145transcription factor bHLH18
TrEMBLA0A2K3MQ110.0A0A2K3MQ11_TRIPR; Transcription factor bHLH25-like protein
STRINGXP_004509037.11e-129(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF110691238
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.13e-46bHLH family protein