PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Tp57577_TGAC_v2_mRNA23194

Organism

Trifolium pratense

Taxonomic ID

57577

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium

Family

bHLH

Protein Properties

Length: 404aa MW: 45539.3 Da PI: 4.9445

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Tp57577_TGAC_v2_mRNA23194	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	29	1.9e-09	222	266	5	54
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 h ++Er+RR+ + ++f L l+P++ kK++Ka++L+ ++Y+k+L Tp57577_TGAC_v2_mRNA23194 222 HIMAERKRREILGQSFIALAALVPNL-----KKMDKASVLTDSIKYVKEL 266 899*********************.....9**************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	13.84	217	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Gene3D	G3DSA:4.10.280.10	6.3E-15	221	282	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	7.59E-15	222	285	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	9.85E-11	222	271	No hit	No description
Pfam	PF00010	4.4E-7	222	266	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	4.7E-11	223	272	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MIVSCLPKGF RFEASFKEKH FSFTMEEINN TPINNVSETS SWLSDLEIDE CNIFPEECNL 60 NFLDADEKEE FLSHDIATVF QEQTQQQCLT SESTLNNSFT DETNFDSFDF DFEIERPTKQ 120 LKTIDQSENI IETLSTKLSP SFQSLILSFD NPGNSPHTTN TPQIHGFTPT LNSKQNETVS 180 VFPPQSGNMN VSTQIPKGSS KNQNLETKTS QNKRSRAHGH DHIMAERKRR EILGQSFIAL 240 AALVPNLKKM DKASVLTDSI KYVKELKERL KVLEEQNKKQ EAESVVIPNK PNLCSDFDNP 300 SSCDESIEGA ANANESVLQV EARVSGKEML IRIHCQKQKG LLVKIMAEIQ SFQLFFVNSS 360 VIPFGDSMDI TIISQMGEGY NLSIKELVKN LRMAALKFMS SWH*

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MIVSCLPKGF RFEASFKEKH FSFTMEEINN TPINNVSETS SWLSDLEIDE CNIFPEECNL  60
NFLDADEKEE FLSHDIATVF QEQTQQQCLT SESTLNNSFT DETNFDSFDF DFEIERPTKQ  120
LKTIDQSENI IETLSTKLSP SFQSLILSFD NPGNSPHTTN TPQIHGFTPT LNSKQNETVS  180
VFPPQSGNMN VSTQIPKGSS KNQNLETKTS QNKRSRAHGH DHIMAERKRR EILGQSFIAL  240
AALVPNLKKM DKASVLTDSI KYVKELKERL KVLEEQNKKQ EAESVVIPNK PNLCSDFDNP  300
SSCDESIEGA ANANESVLQV EARVSGKEML IRIHCQKQKG LLVKIMAEIQ SFQLFFVNSS  360
VIPFGDSMDI TIISQMGEGY NLSIKELVKN LRMAALKFMS SWH*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	225	230	ERKRRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Tp57577_TGAC_v2_mRNA23194

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013442259.1	1e-172	transcription factor bHLH18
TrEMBL	A0A2K3N2G9	0.0	A0A2K3N2G9_TRIPR; Transcription factor bHLH25-like protein
STRING	AES90810	1e-155	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF11069	12	38

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G22750.2	2e-43	bHLH family protein

Link Out ? help Back to Top
Phytozome	Tp57577_TGAC_v2_mRNA23194