PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Tp57577_TGAC_v2_mRNA23192
Organism
Trifolium pratense
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Trifolieae; Trifolium
Family bHLH
Protein Properties Length: 297aa    MW: 33532.3 Da    PI: 7.4496
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Tp57577_TGAC_v2_mRNA23192genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH352.5e-11112156554
                                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                                h ++Er RR++i + f  L  l+P++     kK++Ka++L  A++Y+k+L
  Tp57577_TGAC_v2_mRNA23192 112 HIIAERLRREKISQQFIALSALIPNL-----KKMDKASVLGDAIKYVKEL 156
                                889***********************.....9****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.894107156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.7E-16112169IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.14E-10112161No hitNo description
PfamPF000107.5E-9112156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.83E-16112174IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.3E-13113162IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEESWTNWLC DMEPDDYRFI NESSINTDIN QVSSLERPSK LLKTASSSSS SPCSYILTFE  60
NENPPPIKVQ PALKTKTKVV NSKNEQRRVN TQESNMKKNS FSKSTTHHTP DHIIAERLRR  120
EKISQQFIAL SALIPNLKKM DKASVLGDAI KYVKELKEQV KVLEEQTKKK SVESVMVVKK  180
LSQLYVDEDV SDTSSNSCDE NSDETSKTYL SSLPEVEARL SGKNVLIRIL CEKDKGVMVN  240
VYREIEKLHL SVIDASSFSF GSSVLAITII TQMEEELNMS VQKMAKQLRF GLVQLN*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-14111160857Transcription factor MYC2
5gnj_B2e-14111160857Transcription factor MYC2
5gnj_E2e-14111160857Transcription factor MYC2
5gnj_F2e-14111160857Transcription factor MYC2
5gnj_G2e-14111160857Transcription factor MYC2
5gnj_I2e-14111160857Transcription factor MYC2
5gnj_M2e-14111160857Transcription factor MYC2
5gnj_N2e-14111160857Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapTp57577_TGAC_v2_mRNA23192
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024638889.11e-152transcription factor bHLH18
TrEMBLA0A2Z6LYV20.0A0A2Z6LYV2_TRISU; Uncharacterized protein
STRINGXP_004509201.11e-146(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G22750.25e-38bHLH family protein